Variant report

Variant	rs4692549
Chromosome Location	chr4:26585881-26585882
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:195)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:195 , 50 per page) page: 1 2 3 4

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUN	chr4:26585452-26585903	K562	blood:	n/a	n/a
2	STAT5A	chr4:26585361-26585924	K562	blood:	n/a	chr4:26585553-26585561
3	E2F6	chr4:26585467-26586003	K562	blood:	n/a	n/a
4	FOXA2	chr4:26585302-26585974	A549	lung:	n/a	n/a
5	ZNF143	chr4:26585428-26585886	GM12878	blood:	n/a	n/a
6	SIN3AK20	chr4:26585219-26586123	MCF-7	breast:	n/a	n/a
7	MYBL2	chr4:26585291-26585884	HepG2	liver:	n/a	n/a
8	MAX	chr4:26585238-26586082	SK-N-SH	brain:	n/a	n/a
9	BHLHE40	chr4:26585413-26585951	K562	blood:	n/a	n/a
10	GABPA	chr4:26585076-26585922	A549	lung:	n/a	n/a
11	POLR2A	chr4:26585050-26585950	GM12891	blood:	n/a	n/a
12	REST	chr4:26585156-26585975	H1-neurons	neurons:	n/a	n/a
13	IRF4	chr4:26585339-26585893	GM12878	blood:	n/a	n/a
14	EP300	chr4:26585342-26585891	A549	lung:	n/a	n/a
15	GABPA	chr4:26585202-26585942	HL-60	blood:	n/a	n/a
16	HEY1	chr4:26585443-26585914	K562	blood:	n/a	n/a
17	POLR2A	chr4:26585261-26585957	GM18951	blood:	n/a	n/a
18	POLR2A	chr4:26585574-26585895	MCF-7	breast:	n/a	n/a
19	SIN3AK20	chr4:26585097-26586266	HCT-116	colon:	n/a	n/a
20	POLR2A	chr4:26585351-26585960	K562	blood:	n/a	n/a
21	POLR2A	chr4:26585086-26586282	MCF10A-Er-Src	breast:	n/a	n/a
22	POLR2A	chr4:26585212-26585990	GM12878	blood:	n/a	n/a
23	PML	chr4:26585192-26586073	GM12878	blood:	n/a	n/a
24	PAX5	chr4:26585523-26585918	GM12892	blood:	n/a	n/a
25	GABPA	chr4:26585120-26586000	SK-N-SH	brain:	n/a	n/a
26	MAX	chr4:26585378-26586311	K562	blood:	n/a	n/a
27	GABPA	chr4:26584948-26586049	HL-60	blood:	n/a	n/a
28	MXI1	chr4:26585454-26585882	HepG2	liver:	n/a	n/a
29	POLR2A	chr4:26585103-26586317	U87	brain:	n/a	n/a
30	BRCA1	chr4:26585418-26586246	Hela-S3	cervix:	n/a	n/a
31	SIN3AK20	chr4:26585523-26585899	H1-hESC	embryonic stem cell:	n/a	n/a
32	POLR2A	chr4:26585408-26585896	HUVEC	blood vessel:	n/a	n/a
33	GABPA	chr4:26585069-26586129	SK-N-SH	brain:	n/a	n/a
34	SIN3A	chr4:26585231-26585978	GM12878	blood:	n/a	n/a
35	CEBPB	chr4:26585370-26585937	A549	lung:	n/a	n/a
36	POLR2A	chr4:26585367-26586263	K562	blood:	n/a	n/a
37	FOXM1	chr4:26585174-26586067	GM12878	blood:	n/a	n/a
38	CUX1	chr4:26585270-26586022	K562	blood:	n/a	n/a
39	POLR2A	chr4:26585186-26585959	GM19193	blood:	n/a	n/a
40	MAZ	chr4:26585446-26586011	Hela-S3	cervix:	n/a	n/a
41	MAX	chr4:26585327-26585920	HepG2	liver:	n/a	n/a
42	SIN3AK20	chr4:26585437-26586067	SK-N-SH	brain:	n/a	n/a
43	POLR2A	chr4:26585144-26585917	H1-hESC	embryonic stem cell:	n/a	n/a
44	MXI1	chr4:26585348-26586262	Hela-S3	cervix:	n/a	n/a
45	CBX3	chr4:26584974-26586052	HCT-116	colon:	n/a	n/a
46	HCFC1	chr4:26584990-26586058	Hela-S3	cervix:	n/a	n/a
47	POLR2A	chr4:26585200-26585939	GM12891	blood:	n/a	n/a
48	YY1	chr4:26585336-26585957	ECC-1	luminal epithelium:	n/a	n/a
49	TCF7L2	chr4:26585403-26586144	Hela-S3	cervix:	n/a	n/a
50	MXI1	chr4:26584947-26586033	GM12878	blood:	n/a	n/a

No data

Variant related genes	Relation type
TBC1D19	TF binding region

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs10939134	0.95[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap]
rs1129230	0.83[ASW][hapmap];0.90[CHB][hapmap];0.97[CHD][hapmap];0.86[GIH][hapmap];0.83[LWK][hapmap];0.87[MKK][hapmap];0.83[TSI][hapmap]
rs11721891	0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs11931159	0.95[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap]
rs12505249	0.89[GIH][hapmap];0.83[TSI][hapmap]
rs12507314	0.86[GIH][hapmap];0.81[TSI][hapmap]
rs12510371	0.83[CEU][hapmap]
rs12650361	0.91[ASW][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs13125612	0.91[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs13138699	0.91[GIH][hapmap];0.83[TSI][hapmap]
rs13138712	0.80[CEU][hapmap]
rs13146364	0.95[CHB][hapmap];0.88[JPT][hapmap];0.94[YRI][hapmap]
rs13146615	0.91[GIH][hapmap];0.83[TSI][hapmap]
rs1565303	0.95[CHB][hapmap];0.88[JPT][hapmap];0.90[ASN][1000 genomes]
rs1565304	0.89[ASN][1000 genomes]
rs1619573	0.95[CHB][hapmap];0.97[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.90[ASN][1000 genomes]
rs1641562	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs1861470	0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs260934	0.95[CHB][hapmap];0.89[JPT][hapmap];0.85[ASN][1000 genomes]
rs260935	0.85[ASN][1000 genomes]
rs260937	0.87[ASN][1000 genomes]
rs260939	0.85[ASN][1000 genomes]
rs260946	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs260948	1.00[CHB][hapmap];0.89[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs260950	0.91[ASW][hapmap];0.95[CHB][hapmap];0.84[CHD][hapmap];0.91[GIH][hapmap];0.94[LWK][hapmap];0.90[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs260952	0.82[AFR][1000 genomes];0.81[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs260956	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs260958	1.00[CHB][hapmap];0.95[CHD][hapmap];0.89[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap];0.93[ASN][1000 genomes]
rs260959	0.95[CHB][hapmap];0.89[JPT][hapmap];0.90[ASN][1000 genomes]
rs260960	0.90[ASN][1000 genomes]
rs2908823	0.90[AFR][1000 genomes];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs34832881	0.97[ASN][1000 genomes]
rs4437235	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs4527463	0.91[ASW][hapmap];0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.82[MEX][hapmap];0.85[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs4588446	0.91[ASW][hapmap];0.91[CHB][hapmap];0.92[CHD][hapmap];0.89[GIH][hapmap];0.94[JPT][hapmap];0.95[MKK][hapmap];0.83[TSI][hapmap]
rs4590010	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.81[MKK][hapmap];0.83[TSI][hapmap]
rs67655603	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs6858652	0.91[ASW][hapmap];0.95[CHB][hapmap];0.97[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];1.00[LWK][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];1.00[YRI][hapmap]
rs7658999	0.95[CHB][hapmap];0.95[CHD][hapmap];0.91[GIH][hapmap];0.89[JPT][hapmap];0.83[TSI][hapmap]
rs7677353	0.82[ASN][1000 genomes]
rs7683324	0.87[CHB][hapmap];0.83[YRI][hapmap]

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26584800-26586200	Active TSS	Brain Anterior Caudate	brain
2	chr4:26584800-26586200	Active TSS	Brain Cingulate Gyrus	brain
3	chr4:26584800-26586200	Active TSS	Brain Inferior Temporal Lobe	brain
4	chr4:26584800-26586200	Active TSS	Duodenum Smooth Muscle	Duodenum
5	chr4:26584800-26586200	Active TSS	Skeletal Muscle Male	skeletal muscle
6	chr4:26584800-26586200	Active TSS	Stomach Smooth Muscle	stomach
7	chr4:26584800-26586400	Active TSS	Breast Myoepithelial Primary Cells	Breast
8	chr4:26584800-26586400	Active TSS	Brain Hippocampus Middle	brain
9	chr4:26584800-26586400	Active TSS	Fetal Kidney	kidney
10	chr4:26584800-26586600	Active TSS	Primary B cells from cord blood	blood
11	chr4:26584800-26586800	Active TSS	Brain Germinal Matrix	brain
12	chr4:26584800-26586800	Active TSS	Fetal Brain Female	brain
13	chr4:26584800-26587000	Active TSS	Pancreatic Islets	Pancreatic Islet
14	chr4:26584800-26587200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr4:26585000-26586000	Active TSS	Primary T cells fromperipheralblood	blood
16	chr4:26585000-26586000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
17	chr4:26585000-26586000	Active TSS	Duodenum Mucosa	Duodenum
18	chr4:26585000-26586000	Active TSS	Fetal Muscle Leg	muscle
19	chr4:26585000-26586000	Active TSS	Placenta	Placenta
20	chr4:26585000-26586200	Active TSS	iPS-18 Cell Line	embryonic stem cell
21	chr4:26585000-26586200	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr4:26585000-26586200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr4:26585000-26586200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
24	chr4:26585000-26586200	Active TSS	Fetal Adrenal Gland	Adrenal Gland
25	chr4:26585000-26586200	Active TSS	Fetal Stomach	stomach
26	chr4:26585000-26586200	Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr4:26585000-26586400	Active TSS	H1 Cell Line	embryonic stem cell
28	chr4:26585000-26586400	Active TSS	iPS-15b Cell Line	embryonic stem cell
29	chr4:26585000-26586400	Flanking Active TSS	Primary hematopoietic stem cells	blood
30	chr4:26585000-26586400	Active TSS	Aorta	Aorta
31	chr4:26585000-26586400	Active TSS	Brain Substantia Nigra	brain
32	chr4:26585000-26586400	Active TSS	Rectal Smooth Muscle	rectum
33	chr4:26585000-26586600	Active TSS	ES-I3 Cell Line	embryonic stem cell
34	chr4:26585000-26586600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
35	chr4:26585000-26586600	Active TSS	HUES6 Cell Line	embryonic stem cell
36	chr4:26585000-26586600	Active TSS	HUES64 Cell Line	embryonic stem cell
37	chr4:26585000-26586600	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
38	chr4:26585000-26586600	Active TSS	Colonic Mucosa	Colon
39	chr4:26585000-26586600	Active TSS	Fetal Brain Male	brain
40	chr4:26585000-26586600	Active TSS	Fetal Muscle Trunk	muscle
41	chr4:26585000-26586600	Active TSS	Psoas Muscle	Psoas
42	chr4:26585000-26586600	Active TSS	Right Atrium	heart
43	chr4:26585000-26586600	Active TSS	Right Ventricle	heart
44	chr4:26585000-26586800	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
45	chr4:26585000-26586800	Active TSS	Thymus	Thymus
46	chr4:26585000-26587000	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:26585000-26587600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:26585000-26588800	Active TSS	Fetal Thymus	thymus
49	chr4:26585200-26586000	Active TSS	Primary B cells from peripheral blood	blood
50	chr4:26585200-26586000	Active TSS	Primary T cells from cord blood	blood

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