Variant report

Variant	rs260946
Chromosome Location	chr4:26607436-26607437
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10000211	0.91[EUR][1000 genomes]
rs10939124	0.83[EUR][1000 genomes]
rs10939128	0.91[EUR][1000 genomes]
rs10939132	0.81[EUR][1000 genomes]
rs11733702	0.91[EUR][1000 genomes]
rs12501439	0.87[EUR][1000 genomes]
rs12505249	0.92[EUR][1000 genomes]
rs12510371	0.93[EUR][1000 genomes]
rs12510995	0.85[EUR][1000 genomes]
rs12640312	0.88[EUR][1000 genomes]
rs12640951	0.91[EUR][1000 genomes]
rs12650361	0.84[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13105574	0.93[EUR][1000 genomes]
rs13111922	0.92[EUR][1000 genomes]
rs13121299	0.94[EUR][1000 genomes]
rs13121378	0.88[EUR][1000 genomes]
rs13125612	0.81[EUR][1000 genomes]
rs13136955	0.87[EUR][1000 genomes]
rs13138699	0.93[EUR][1000 genomes]
rs13138712	0.91[EUR][1000 genomes]
rs13146364	0.81[EUR][1000 genomes]
rs13146615	0.88[EUR][1000 genomes]
rs1565303	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1565304	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1619573	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1641562	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1861470	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2111006	0.94[EUR][1000 genomes]
rs2309413	0.94[EUR][1000 genomes]
rs260934	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260935	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260937	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs260939	0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260948	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs260950	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260952	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs260956	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs260958	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs260959	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs260960	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2908823	0.93[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34832881	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35232657	0.89[EUR][1000 genomes]
rs4365714	0.81[EUR][1000 genomes]
rs4467548	0.81[EUR][1000 genomes]
rs4692549	0.84[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs60915838	0.80[EUR][1000 genomes]
rs62409934	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62412678	0.80[EUR][1000 genomes]
rs6448458	0.94[EUR][1000 genomes]
rs67655603	0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6821370	0.91[EUR][1000 genomes]
rs7655144	0.81[EUR][1000 genomes]
rs7677353	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs7687087	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26591600-26609400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:26591800-26607800	Weak transcription	Thymus	Thymus
3	chr4:26596200-26621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26598800-26613400	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:26606400-26615400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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