Variant report

Variant	rs6448458
Chromosome Location	chr4:26605309-26605310
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 84 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:83)

rs_ID	r²[population]
rs10000211	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939124	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10939128	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10939132	0.82[EUR][1000 genomes]
rs10939134	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs10939135	0.81[EUR][1000 genomes]
rs1129230	0.92[CEU][hapmap]
rs11721891	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs11733702	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11931159	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs11942145	0.93[CEU][hapmap]
rs12498454	0.82[EUR][1000 genomes]
rs12501439	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12504472	0.82[EUR][1000 genomes]
rs12505249	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507314	0.92[CEU][hapmap];0.82[CHB][hapmap];0.95[JPT][hapmap]
rs12510371	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12510995	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12640312	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640951	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12644574	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs12647180	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs12650361	1.00[CEU][hapmap];0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs13105574	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13111381	0.84[EUR][1000 genomes]
rs13111922	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13121299	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13121378	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13125612	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs13131355	0.80[EUR][1000 genomes]
rs13136955	0.92[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13138699	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs13138712	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13146364	0.96[CEU][hapmap];0.82[EUR][1000 genomes]
rs13146615	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1565303	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1565304	0.92[EUR][1000 genomes]
rs1619573	0.96[CEU][hapmap];0.93[EUR][1000 genomes]
rs1641562	0.89[CEU][hapmap];0.87[EUR][1000 genomes]
rs1861470	0.96[CEU][hapmap];0.90[EUR][1000 genomes]
rs2111006	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2309413	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs260934	0.90[EUR][1000 genomes]
rs260935	0.90[EUR][1000 genomes]
rs260937	0.91[EUR][1000 genomes]
rs260939	0.88[EUR][1000 genomes]
rs260946	0.94[EUR][1000 genomes]
rs260948	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs260950	1.00[CEU][hapmap];0.98[EUR][1000 genomes]
rs260952	0.95[EUR][1000 genomes]
rs260956	0.93[EUR][1000 genomes]
rs260958	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs260959	1.00[CEU][hapmap];0.93[EUR][1000 genomes]
rs260960	0.93[EUR][1000 genomes]
rs2908823	0.97[EUR][1000 genomes]
rs34010107	0.82[EUR][1000 genomes]
rs34241157	0.81[EUR][1000 genomes]
rs34832881	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35232657	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35445672	0.92[AFR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4321621	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs4355378	0.84[EUR][1000 genomes]
rs4365714	0.82[EUR][1000 genomes]
rs4437235	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4467548	0.82[EUR][1000 genomes]
rs4527463	0.92[CEU][hapmap];0.80[EUR][1000 genomes]
rs4590010	0.96[CEU][hapmap];0.80[EUR][1000 genomes]
rs4692551	0.83[EUR][1000 genomes]
rs60503601	0.82[EUR][1000 genomes]
rs60915838	0.81[EUR][1000 genomes]
rs61690082	0.84[EUR][1000 genomes]
rs62409934	0.94[EUR][1000 genomes]
rs62412678	0.81[EUR][1000 genomes]
rs67655603	0.93[EUR][1000 genomes]
rs6821370	1.00[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6858652	0.92[CEU][hapmap]
rs7655144	0.82[EUR][1000 genomes]
rs7657453	0.84[EUR][1000 genomes]
rs7658999	0.89[CEU][hapmap]
rs7683324	0.96[CEU][hapmap]
rs7687087	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs9790514	0.80[EUR][1000 genomes]
rs9790776	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv966489	chr4:26600972-26641744	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26591600-26609400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr4:26591800-26607800	Weak transcription	Thymus	Thymus
3	chr4:26596200-26621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:26598800-26613400	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links