Variant report

Variant	rs7657453
Chromosome Location	chr4:26681324-26681325
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:26680851..26682433-chr4:26686053..26687602,2	K562	blood:

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10000211	0.85[EUR][1000 genomes]
rs10939128	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10939131	0.92[AFR][1000 genomes]
rs10939132	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10939134	0.96[EUR][1000 genomes]
rs10939135	0.87[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1129230	0.93[EUR][1000 genomes]
rs1135204	0.93[EUR][1000 genomes]
rs11721891	0.96[EUR][1000 genomes]
rs11724595	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11726910	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11733702	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11734761	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11931159	0.97[EUR][1000 genomes]
rs11937465	0.95[EUR][1000 genomes]
rs11944010	0.95[EUR][1000 genomes]
rs12498454	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12501439	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12504472	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505249	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12505393	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12507314	0.87[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12510371	0.83[EUR][1000 genomes]
rs12510995	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12640312	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12640932	0.81[AFR][1000 genomes]
rs12640951	0.81[EUR][1000 genomes]
rs12644574	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12647180	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12650361	0.81[EUR][1000 genomes]
rs13105574	0.83[EUR][1000 genomes]
rs13111381	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13111922	0.86[EUR][1000 genomes]
rs13112222	0.81[EUR][1000 genomes]
rs13121299	0.84[EUR][1000 genomes]
rs13121378	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13123511	0.93[EUR][1000 genomes]
rs13125612	0.98[EUR][1000 genomes]
rs13131355	0.96[EUR][1000 genomes]
rs13136955	0.86[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13138699	0.83[EUR][1000 genomes]
rs13138712	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13146364	0.98[EUR][1000 genomes]
rs13146615	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13151477	0.93[EUR][1000 genomes]
rs1565303	0.85[EUR][1000 genomes]
rs1565304	0.84[EUR][1000 genomes]
rs1619573	0.85[EUR][1000 genomes]
rs1861470	0.90[EUR][1000 genomes]
rs2111006	0.84[EUR][1000 genomes]
rs2309413	0.84[EUR][1000 genomes]
rs260934	0.90[EUR][1000 genomes]
rs260935	0.90[EUR][1000 genomes]
rs260937	0.87[EUR][1000 genomes]
rs260939	0.84[EUR][1000 genomes]
rs260948	0.82[EUR][1000 genomes]
rs260950	0.82[EUR][1000 genomes]
rs260952	0.81[EUR][1000 genomes]
rs260956	0.83[EUR][1000 genomes]
rs260958	0.84[EUR][1000 genomes]
rs260959	0.85[EUR][1000 genomes]
rs260960	0.85[EUR][1000 genomes]
rs2908823	0.83[EUR][1000 genomes]
rs34010107	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34241157	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34832881	0.82[EUR][1000 genomes]
rs34837351	0.93[EUR][1000 genomes]
rs35124296	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35232657	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs35654367	0.95[EUR][1000 genomes]
rs4234981	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4321621	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4355378	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4365714	0.98[EUR][1000 genomes]
rs4437235	0.96[EUR][1000 genomes]
rs4467548	0.98[EUR][1000 genomes]
rs4527463	0.96[EUR][1000 genomes]
rs4588446	0.92[EUR][1000 genomes]
rs4590010	0.96[EUR][1000 genomes]
rs4602486	0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4692551	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs5024581	0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55767426	0.80[EUR][1000 genomes]
rs56150091	0.82[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58565506	0.90[EUR][1000 genomes]
rs60503601	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60915838	0.97[EUR][1000 genomes]
rs61690082	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62299027	0.92[EUR][1000 genomes]
rs62300967	0.93[EUR][1000 genomes]
rs62300968	0.93[EUR][1000 genomes]
rs62409934	0.80[EUR][1000 genomes]
rs62412678	0.97[EUR][1000 genomes]
rs6448458	0.84[EUR][1000 genomes]
rs67655603	0.83[EUR][1000 genomes]
rs6821370	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6858652	0.95[EUR][1000 genomes]
rs7655144	0.98[EUR][1000 genomes]
rs7658999	0.96[EUR][1000 genomes]
rs7672267	0.95[EUR][1000 genomes]
rs7683324	0.96[EUR][1000 genomes]
rs7687087	0.82[AFR][1000 genomes];0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7689475	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs9790514	0.96[EUR][1000 genomes]
rs9790776	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26659600-26687600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr4:26660600-26689000	Weak transcription	HMEC	breast
5	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
6	chr4:26663600-26684000	Weak transcription	Fetal Kidney	kidney
7	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
8	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
10	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr4:26666800-26685800	Weak transcription	Left Ventricle	heart
12	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
14	chr4:26674000-26681600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr4:26676000-26687000	Weak transcription	NHDF-Ad	bronchial
16	chr4:26676800-26685800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr4:26678400-26681800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr4:26678400-26682400	ZNF genes & repeats	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
20	chr4:26678800-26682000	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr4:26679000-26681800	ZNF genes & repeats	Thymus	Thymus
22	chr4:26679000-26682600	Strong transcription	Osteobl	bone
23	chr4:26679200-26681800	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
24	chr4:26679800-26681800	ZNF genes & repeats	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:26679800-26681800	ZNF genes & repeats	Primary B cells from cord blood	blood
26	chr4:26679800-26681800	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr4:26679800-26681800	ZNF genes & repeats	Fetal Intestine Small	intestine
28	chr4:26680000-26681400	ZNF genes & repeats	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr4:26680000-26681600	ZNF genes & repeats	ES-I3 Cell Line	embryonic stem cell
30	chr4:26680000-26681800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr4:26680000-26681800	ZNF genes & repeats	Fetal Muscle Leg	muscle
32	chr4:26680000-26682200	ZNF genes & repeats	Fetal Brain Female	brain
33	chr4:26680000-26682600	ZNF genes & repeats	Dnd41	blood
34	chr4:26680000-26688400	Weak transcription	NHLF	lung
35	chr4:26680400-26681400	ZNF genes & repeats	Primary T cells fromperipheralblood	blood
36	chr4:26680400-26681400	ZNF genes & repeats	Brain Inferior Temporal Lobe	brain
37	chr4:26680400-26681600	ZNF genes & repeats	Liver	Liver
38	chr4:26680400-26691000	Weak transcription	Primary T cells from cord blood	blood
39	chr4:26680600-26681400	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
40	chr4:26680600-26681400	ZNF genes & repeats	Fetal Intestine Large	intestine
41	chr4:26680600-26681400	ZNF genes & repeats	Fetal Stomach	stomach
42	chr4:26680600-26681400	Strong transcription	Ovary	ovary
43	chr4:26680600-26681600	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
44	chr4:26680600-26681600	ZNF genes & repeats	Brain Hippocampus Middle	brain
45	chr4:26680600-26681600	ZNF genes & repeats	Fetal Lung	lung
46	chr4:26680600-26681800	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
47	chr4:26680600-26681800	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
48	chr4:26680600-26681800	ZNF genes & repeats	Foreskin Keratinocyte Primary Cells skin03	Skin
49	chr4:26680600-26681800	ZNF genes & repeats	Brain Germinal Matrix	brain
50	chr4:26680600-26681800	ZNF genes & repeats	Fetal Thymus	thymus

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