Variant report

Variant	rs10939131
Chromosome Location	chr4:26687751-26687752
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:49)

rs_ID	r²[population]
rs10939134	1.00[CEU][hapmap]
rs1129230	0.96[CEU][hapmap]
rs11721891	1.00[CEU][hapmap]
rs11726910	0.82[AFR][1000 genomes]
rs11733702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11931159	1.00[CEU][hapmap]
rs11942145	0.96[CEU][hapmap]
rs12498454	0.89[AFR][1000 genomes]
rs12504472	0.82[AFR][1000 genomes]
rs12505249	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12505393	0.88[AFR][1000 genomes]
rs12507314	0.96[CEU][hapmap];0.95[JPT][hapmap]
rs12510371	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs12510995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12640312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12644574	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs12647180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs12650361	0.96[CEU][hapmap]
rs13111381	0.88[AFR][1000 genomes]
rs13121378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13125612	1.00[CEU][hapmap]
rs13138699	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13138712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13146364	1.00[CEU][hapmap]
rs13146615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1565303	1.00[CEU][hapmap]
rs1619573	1.00[CEU][hapmap]
rs1641562	0.93[CEU][hapmap]
rs1861470	1.00[CEU][hapmap]
rs2111006	1.00[YRI][hapmap]
rs2309413	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs260948	0.96[CEU][hapmap]
rs260950	0.96[CEU][hapmap]
rs260958	0.96[CEU][hapmap]
rs260959	0.96[CEU][hapmap]
rs4321621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes]
rs4355378	0.92[AFR][1000 genomes]
rs4437235	1.00[CEU][hapmap]
rs4527463	0.96[CEU][hapmap]
rs4590010	1.00[CEU][hapmap]
rs4692551	0.89[AFR][1000 genomes]
rs61690082	0.92[AFR][1000 genomes]
rs6448458	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6821370	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs6858652	0.96[CEU][hapmap]
rs7657453	0.92[AFR][1000 genomes]
rs7658999	0.92[CEU][hapmap]
rs7683324	1.00[CEU][hapmap]
rs7687087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
2	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
3	chr4:26660600-26689000	Weak transcription	HMEC	breast
4	chr4:26660800-26691400	Weak transcription	Psoas Muscle	Psoas
5	chr4:26663600-26691800	Weak transcription	Right Ventricle	heart
6	chr4:26663800-26691200	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr4:26663800-26691400	Weak transcription	Stomach Smooth Muscle	stomach
8	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr4:26666800-26691200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
11	chr4:26678600-26691400	Weak transcription	Adipose Nuclei	Adipose
12	chr4:26680000-26688400	Weak transcription	NHLF	lung
13	chr4:26680400-26691000	Weak transcription	Primary T cells from cord blood	blood
14	chr4:26681400-26688200	Weak transcription	NH-A	brain
15	chr4:26681400-26691400	Weak transcription	Ovary	ovary
16	chr4:26681400-26691800	Weak transcription	Brain Inferior Temporal Lobe	brain
17	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
18	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
19	chr4:26681400-26695200	Weak transcription	Lung	lung
20	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
21	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
22	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
23	chr4:26681600-26687800	Weak transcription	Fetal Brain Male	brain
24	chr4:26681600-26691200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
25	chr4:26681600-26691400	Weak transcription	Brain Hippocampus Middle	brain
26	chr4:26681600-26692200	Weak transcription	Liver	Liver
27	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr4:26681800-26689200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr4:26681800-26691000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:26681800-26691200	Weak transcription	Brain Angular Gyrus	brain
32	chr4:26681800-26691400	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:26681800-26693800	Weak transcription	Fetal Intestine Small	intestine
34	chr4:26681800-26694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
35	chr4:26681800-26694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
37	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr4:26682000-26688000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr4:26682000-26693800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:26682200-26691800	Weak transcription	Fetal Brain Female	brain
44	chr4:26682400-26691600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr4:26682600-26691200	Weak transcription	Dnd41	blood
46	chr4:26682800-26688600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
47	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr4:26683800-26691400	Weak transcription	Brain Substantia Nigra	brain
49	chr4:26684000-26693400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr4:26684000-26694400	Weak transcription	Rectal Mucosa Donor 29	rectum

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