Variant report

Variant	rs12644574
Chromosome Location	chr4:26704160-26704161
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 109 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:105)

rs_ID	r²[population]
rs10000211	0.83[EUR][1000 genomes]
rs10939128	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10939131	0.88[AFR][1000 genomes]
rs10939132	0.97[EUR][1000 genomes]
rs10939134	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs10939135	0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1129230	0.96[CEU][hapmap];0.94[EUR][1000 genomes]
rs1135204	0.93[EUR][1000 genomes]
rs11721891	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11724595	0.85[AFR][1000 genomes];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11726910	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11733702	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes]
rs11734761	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11931159	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs11937465	0.95[EUR][1000 genomes]
rs11942145	0.96[CEU][hapmap]
rs11944010	0.96[EUR][1000 genomes]
rs12498454	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12501439	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12504472	0.91[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12505249	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes]
rs12505393	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12507314	0.96[CEU][hapmap];0.95[JPT][hapmap];0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12510371	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes]
rs12510995	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12640312	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12640932	0.82[AFR][1000 genomes]
rs12647180	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12650361	0.96[CEU][hapmap]
rs13105574	0.82[EUR][1000 genomes]
rs13111381	0.92[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13111922	0.84[EUR][1000 genomes]
rs13112222	0.83[EUR][1000 genomes]
rs13121299	0.82[EUR][1000 genomes]
rs13121378	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13123511	0.94[EUR][1000 genomes]
rs13125612	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13131355	0.97[EUR][1000 genomes]
rs13136955	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13138699	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes]
rs13138712	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13146364	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs13146615	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13151477	0.94[EUR][1000 genomes]
rs1565303	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1565304	0.82[EUR][1000 genomes]
rs1619573	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1641562	0.93[CEU][hapmap]
rs1861470	1.00[CEU][hapmap];0.89[EUR][1000 genomes]
rs2111006	1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs2309413	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs260934	0.89[EUR][1000 genomes]
rs260935	0.89[EUR][1000 genomes]
rs260937	0.86[EUR][1000 genomes]
rs260939	0.82[EUR][1000 genomes]
rs260948	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs260950	0.96[CEU][hapmap];0.81[EUR][1000 genomes]
rs260956	0.82[EUR][1000 genomes]
rs260958	0.96[CEU][hapmap];0.83[EUR][1000 genomes]
rs260959	0.96[CEU][hapmap];0.84[EUR][1000 genomes]
rs260960	0.84[EUR][1000 genomes]
rs2908823	0.81[EUR][1000 genomes]
rs34010107	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34241157	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34832881	0.80[EUR][1000 genomes]
rs34837351	0.94[EUR][1000 genomes]
rs35124296	0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35232657	0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35588742	0.80[EUR][1000 genomes]
rs35654367	0.96[EUR][1000 genomes]
rs4234981	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4321621	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4355378	0.96[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4365714	0.97[EUR][1000 genomes]
rs4437235	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4467548	0.97[EUR][1000 genomes]
rs4527463	0.96[CEU][hapmap];0.97[EUR][1000 genomes]
rs4588446	0.93[EUR][1000 genomes]
rs4590010	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs4602486	0.84[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4692551	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs5024581	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55767426	0.82[EUR][1000 genomes]
rs56150091	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58565506	0.91[EUR][1000 genomes]
rs60503601	0.88[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs60915838	0.98[EUR][1000 genomes]
rs61690082	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62299027	0.93[EUR][1000 genomes]
rs62300967	0.94[EUR][1000 genomes]
rs62300968	0.94[EUR][1000 genomes]
rs62412678	0.98[EUR][1000 genomes]
rs6448458	0.96[CEU][hapmap];0.96[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes]
rs67655603	0.82[EUR][1000 genomes]
rs6821370	1.00[CEU][hapmap];1.00[YRI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6858652	0.96[CEU][hapmap];0.96[EUR][1000 genomes]
rs7655144	0.97[EUR][1000 genomes]
rs7657453	0.96[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7658999	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7672267	0.96[EUR][1000 genomes]
rs7683324	1.00[CEU][hapmap];0.94[EUR][1000 genomes]
rs7687087	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7689475	0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9790514	0.97[EUR][1000 genomes]
rs9790776	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
2	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
6	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
7	chr4:26692200-26712200	Weak transcription	Brain Hippocampus Middle	brain
8	chr4:26692400-26726400	Weak transcription	Ovary	ovary
9	chr4:26693000-26711000	Weak transcription	Duodenum Smooth Muscle	Duodenum
10	chr4:26693000-26716000	Weak transcription	HSMM	muscle
11	chr4:26694200-26709600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
12	chr4:26694400-26718600	Weak transcription	Osteobl	bone
13	chr4:26694600-26711600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:26695000-26704400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr4:26696200-26718800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr4:26696200-26726400	Weak transcription	Thymus	Thymus
17	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
18	chr4:26696400-26710600	Weak transcription	Fetal Thymus	thymus
19	chr4:26696400-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr4:26696400-26726600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr4:26702000-26704600	Enhancers	K562	blood
22	chr4:26703000-26704200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr4:26703400-26711000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr4:26703800-26715200	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr4:26703800-26718600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
26	chr4:26703800-26718600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr4:26703800-26718800	Weak transcription	NH-A	brain

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