Variant report

Variant	rs7689475
Chromosome Location	chr4:26766687-26766688
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 83 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:81)

rs_ID	r²[population]
rs10939134	0.89[CEU][hapmap];0.81[EUR][1000 genomes]
rs10939135	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1129230	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.84[EUR][1000 genomes]
rs1135204	0.83[EUR][1000 genomes]
rs11721891	0.89[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs11724595	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11726910	0.91[ASN][1000 genomes]
rs11733702	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11734761	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11931159	0.88[CEU][hapmap];0.82[EUR][1000 genomes]
rs11937465	0.81[EUR][1000 genomes]
rs11942145	0.84[CEU][hapmap]
rs12498454	0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12504472	0.85[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12505249	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];0.95[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs12505393	0.91[ASN][1000 genomes]
rs12507314	0.92[CEU][hapmap];0.90[CHD][hapmap];0.91[GIH][hapmap];0.95[JPT][hapmap];0.94[MKK][hapmap];0.83[TSI][hapmap];0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12510371	0.91[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12510995	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12640312	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12644574	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.82[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12647180	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12650361	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap]
rs13111381	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13112222	0.96[EUR][1000 genomes]
rs13121378	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs13123511	0.84[EUR][1000 genomes]
rs13125612	0.89[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap]
rs13131355	0.81[EUR][1000 genomes]
rs13138699	1.00[ASW][hapmap];0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.95[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs13138712	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13146364	0.88[CEU][hapmap]
rs13146615	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[CHB][hapmap];0.98[CHD][hapmap];0.95[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];0.97[MKK][hapmap];0.85[TSI][hapmap];1.00[YRI][hapmap]
rs13151477	0.84[EUR][1000 genomes]
rs1565303	0.89[CEU][hapmap]
rs1619573	0.89[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs1641562	0.82[CEU][hapmap]
rs1861470	0.89[CEU][hapmap]
rs2111006	1.00[YRI][hapmap]
rs2309413	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs260948	0.85[CEU][hapmap]
rs260950	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap]
rs260958	0.85[CEU][hapmap];0.93[GIH][hapmap];0.85[TSI][hapmap]
rs260959	0.85[CEU][hapmap]
rs34010107	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34241157	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs34837351	0.84[EUR][1000 genomes]
rs35124296	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35588742	0.94[EUR][1000 genomes]
rs35654367	0.82[EUR][1000 genomes]
rs4234981	0.91[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4321621	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4355378	0.81[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4437235	0.88[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4527463	0.88[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4588446	0.93[GIH][hapmap];0.85[TSI][hapmap];0.83[EUR][1000 genomes]
rs4590010	0.89[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.81[EUR][1000 genomes]
rs4602486	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4692549	0.81[CEU][hapmap];0.91[GIH][hapmap];0.86[MEX][hapmap];0.93[TSI][hapmap]
rs4692551	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs5024581	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55767426	0.95[EUR][1000 genomes]
rs56150091	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58565506	0.81[EUR][1000 genomes]
rs60503601	0.83[AFR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs60915838	0.80[EUR][1000 genomes]
rs61690082	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62299027	0.83[EUR][1000 genomes]
rs62300967	0.84[EUR][1000 genomes]
rs62300968	0.84[EUR][1000 genomes]
rs62412678	0.80[EUR][1000 genomes]
rs6448458	0.85[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6821370	0.87[CEU][hapmap];1.00[YRI][hapmap]
rs6858652	0.85[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7657453	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7658999	0.82[CEU][hapmap];0.95[GIH][hapmap];0.85[TSI][hapmap];0.82[EUR][1000 genomes]
rs7672267	0.82[EUR][1000 genomes]
rs7683324	0.89[CEU][hapmap]
rs7687087	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9790514	0.81[EUR][1000 genomes]
rs9790776	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv470021	chr4:26721578-27067027	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26696200-26775400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:26711400-26771800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr4:26719400-26780800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr4:26723400-26781000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr4:26724000-26772000	Weak transcription	Brain Angular Gyrus	brain
6	chr4:26727400-26773800	Weak transcription	Left Ventricle	heart
7	chr4:26727400-26775400	Weak transcription	Right Ventricle	heart
8	chr4:26732600-26773800	Weak transcription	Aorta	Aorta
9	chr4:26744400-26775400	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:26745200-26775400	Weak transcription	Brain Anterior Caudate	brain
11	chr4:26746400-26789600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
12	chr4:26746800-26767000	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr4:26747600-26773800	Weak transcription	Pancreas	Pancrea
14	chr4:26747600-26775400	Weak transcription	Small Intestine	intestine
15	chr4:26748000-26780200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr4:26748200-26773600	Weak transcription	Cortex derived primary cultured neurospheres	brain
17	chr4:26748200-26789000	Weak transcription	Gastric	stomach
18	chr4:26748600-26773800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr4:26748800-26772200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr4:26748800-26775400	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr4:26749400-26781000	Weak transcription	NHDF-Ad	bronchial
22	chr4:26749800-26789200	Weak transcription	Fetal Kidney	kidney
23	chr4:26750600-26772800	Weak transcription	Adipose Nuclei	Adipose
24	chr4:26750600-26774200	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:26750600-26780000	Weak transcription	HMEC	breast
26	chr4:26750600-26781000	Weak transcription	Lung	lung
27	chr4:26750800-26775400	Weak transcription	Fetal Intestine Large	intestine
28	chr4:26751200-26775800	Weak transcription	Primary B cells from cord blood	blood
29	chr4:26751400-26775400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:26752200-26780200	Weak transcription	NHEK	skin
31	chr4:26752800-26780000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr4:26753400-26774600	Weak transcription	Pancreatic Islets	Pancreatic Islet
33	chr4:26753400-26775800	Weak transcription	Primary T helper cells fromperipheralblood	blood
34	chr4:26754400-26775400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr4:26754400-26781800	Weak transcription	Primary T cells fromperipheralblood	blood
36	chr4:26754600-26775400	Weak transcription	Fetal Stomach	stomach
37	chr4:26755200-26771800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr4:26755600-26773800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
39	chr4:26755600-26773800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
40	chr4:26755600-26774000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr4:26755600-26774000	Weak transcription	Fetal Muscle Leg	muscle
42	chr4:26755600-26775400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr4:26755600-26775400	Weak transcription	Ovary	ovary
44	chr4:26755600-26775400	Weak transcription	Psoas Muscle	Psoas
45	chr4:26755600-26788600	Weak transcription	NHLF	lung
46	chr4:26755800-26771400	Weak transcription	NH-A	brain
47	chr4:26757600-26789000	Weak transcription	Skeletal Muscle Female	skeletal muscle
48	chr4:26758400-26775400	Weak transcription	Brain Hippocampus Middle	brain
49	chr4:26759000-26775400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr4:26759200-26771800	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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