Variant report

Variant	rs10939132
Chromosome Location	chr4:26692429-26692430
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:104)

rs_ID	r²[population]
rs10000211	0.83[EUR][1000 genomes]
rs10939128	0.85[EUR][1000 genomes]
rs10939134	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10939135	0.95[EUR][1000 genomes]
rs1129230	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1135204	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11721891	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11724595	0.93[EUR][1000 genomes]
rs11726910	0.89[EUR][1000 genomes]
rs11733702	0.85[EUR][1000 genomes]
rs11734761	0.81[EUR][1000 genomes]
rs11931159	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11937465	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11944010	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12498454	0.96[EUR][1000 genomes]
rs12501439	0.89[EUR][1000 genomes]
rs12504472	0.96[EUR][1000 genomes]
rs12505249	0.84[EUR][1000 genomes]
rs12505393	0.90[EUR][1000 genomes]
rs12507314	0.93[EUR][1000 genomes]
rs12510371	0.82[EUR][1000 genomes]
rs12510995	0.88[EUR][1000 genomes]
rs12640312	0.90[EUR][1000 genomes]
rs12644574	0.97[EUR][1000 genomes]
rs12647180	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12650361	0.83[EUR][1000 genomes]
rs13105574	0.82[EUR][1000 genomes]
rs13111381	0.98[EUR][1000 genomes]
rs13111922	0.84[EUR][1000 genomes]
rs13112222	0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13121299	0.82[EUR][1000 genomes]
rs13121378	0.90[EUR][1000 genomes]
rs13123511	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs13125612	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13131355	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13136955	0.86[EUR][1000 genomes]
rs13138699	0.81[EUR][1000 genomes]
rs13138712	0.85[EUR][1000 genomes]
rs13146364	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13146615	0.90[EUR][1000 genomes]
rs13151477	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1565303	0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1565304	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1619573	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1641562	0.84[ASN][1000 genomes]
rs1861470	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2111006	0.82[EUR][1000 genomes]
rs2309413	0.82[EUR][1000 genomes]
rs260934	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs260935	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs260937	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260939	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs260946	0.81[EUR][1000 genomes]
rs260948	0.84[EUR][1000 genomes]
rs260950	0.84[EUR][1000 genomes]
rs260952	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs260956	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs260958	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs260959	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs260960	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2908823	0.84[EUR][1000 genomes]
rs34010107	0.96[EUR][1000 genomes]
rs34241157	0.95[EUR][1000 genomes]
rs34832881	0.83[EUR][1000 genomes]
rs34837351	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs35124296	0.80[EUR][1000 genomes]
rs35232657	0.85[EUR][1000 genomes]
rs35588742	0.80[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs35654367	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4234981	0.93[EUR][1000 genomes]
rs4321621	0.96[EUR][1000 genomes]
rs4355378	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4365714	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4437235	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4467548	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4527463	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4588446	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4590010	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4602486	0.81[EUR][1000 genomes]
rs4692551	0.97[EUR][1000 genomes]
rs55767426	0.82[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56150091	0.93[EUR][1000 genomes]
rs58565506	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs60503601	0.96[EUR][1000 genomes]
rs60915838	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61690082	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62299027	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62300967	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62300968	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62409934	0.82[EUR][1000 genomes]
rs62412678	0.91[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6448458	0.82[EUR][1000 genomes]
rs67655603	0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6821370	0.85[EUR][1000 genomes]
rs6858652	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7655144	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7657453	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs7658999	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7672267	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7677353	0.80[ASN][1000 genomes]
rs7683324	0.89[AMR][1000 genomes];0.97[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7687087	0.90[EUR][1000 genomes]
rs9790514	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9790776	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv1822380	chr4:26690284-26726780	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
2	chr4:26663800-26694000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
3	chr4:26666800-26732200	Weak transcription	Aorta	Aorta
4	chr4:26681400-26693000	Weak transcription	Fetal Stomach	stomach
5	chr4:26681400-26694800	Weak transcription	Fetal Intestine Large	intestine
6	chr4:26681400-26695200	Weak transcription	Lung	lung
7	chr4:26681400-26695400	Weak transcription	Primary T cells fromperipheralblood	blood
8	chr4:26681400-26697000	Weak transcription	Esophagus	oesophagus
9	chr4:26681400-26732400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:26681600-26693600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr4:26681600-26695600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:26681800-26693800	Weak transcription	Fetal Intestine Small	intestine
13	chr4:26681800-26694200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr4:26681800-26694200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
15	chr4:26681800-26695800	Weak transcription	Brain Germinal Matrix	brain
16	chr4:26681800-26696000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:26681800-26696800	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr4:26681800-26718600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr4:26681800-26724400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
20	chr4:26682000-26693800	Weak transcription	Primary T helper cells PMA-I stimulated	--
21	chr4:26683200-26695600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr4:26684000-26693400	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:26684000-26694400	Weak transcription	Rectal Mucosa Donor 29	rectum
24	chr4:26684000-26695000	Weak transcription	Rectal Smooth Muscle	rectum
25	chr4:26684400-26692800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
26	chr4:26684400-26693800	Weak transcription	Pancreas	Pancrea
27	chr4:26684400-26732400	Weak transcription	Fetal Kidney	kidney
28	chr4:26686200-26692600	Weak transcription	Fetal Muscle Leg	muscle
29	chr4:26686200-26694000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
30	chr4:26686200-26695000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
31	chr4:26686200-26696400	Weak transcription	Gastric	stomach
32	chr4:26686800-26693800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr4:26687000-26727000	Weak transcription	Left Ventricle	heart
34	chr4:26687400-26694200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
35	chr4:26689000-26694400	Weak transcription	Fetal Brain Male	brain
36	chr4:26689600-26696600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr4:26690000-26696800	Weak transcription	NHEK	skin
38	chr4:26690200-26694000	Weak transcription	NH-A	brain
39	chr4:26690200-26694800	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr4:26690400-26692800	Weak transcription	Primary B cells from peripheral blood	blood
41	chr4:26690600-26692600	Weak transcription	K562	blood
42	chr4:26690800-26692800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
43	chr4:26691000-26693000	Strong transcription	HSMM	muscle
44	chr4:26691000-26693400	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr4:26691000-26693400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
46	chr4:26691000-26693800	Strong transcription	Osteobl	bone
47	chr4:26691200-26692800	Strong transcription	Dnd41	blood
48	chr4:26691200-26693600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr4:26691200-26695800	Strong transcription	Fetal Thymus	thymus
50	chr4:26691400-26692600	ZNF genes & repeats	Duodenum Smooth Muscle	Duodenum

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