Variant report

Variant	rs7677353
Chromosome Location	chr4:26654281-26654282
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 48 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10000211	0.83[EUR][1000 genomes]
rs10939128	0.84[EUR][1000 genomes]
rs10939132	0.80[ASN][1000 genomes]
rs11733702	0.84[EUR][1000 genomes]
rs12501439	0.83[EUR][1000 genomes]
rs12505249	0.84[EUR][1000 genomes]
rs12510995	0.81[EUR][1000 genomes]
rs12640312	0.83[EUR][1000 genomes]
rs12650361	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs13111922	0.84[EUR][1000 genomes]
rs13121378	0.83[EUR][1000 genomes]
rs13136955	0.84[EUR][1000 genomes]
rs13138712	0.84[EUR][1000 genomes]
rs13146364	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs13146615	0.83[EUR][1000 genomes]
rs1565303	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1565304	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1619573	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1641562	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs1861470	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260934	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260935	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260937	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs260939	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs260946	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs260948	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs260950	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs260952	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs260956	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260958	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs260959	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs260960	0.93[AFR][1000 genomes];0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2908823	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34832881	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35232657	0.84[EUR][1000 genomes]
rs4365714	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4467548	0.81[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs4692549	0.82[ASN][1000 genomes]
rs62409934	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs67655603	0.87[AFR][1000 genomes];0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6821370	0.84[EUR][1000 genomes]
rs7655144	0.80[ASN][1000 genomes]
rs7683324	0.80[AMR][1000 genomes]
rs7687087	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	esv3431385	chr4:26651454-26657152	ZNF genes & repeats Weak transcription Strong transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
5	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
6	chr4:26623000-26670400	Weak transcription	Gastric	stomach
7	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
8	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
9	chr4:26629400-26656800	Weak transcription	Lung	lung
10	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
12	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
13	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
14	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:26640800-26662800	Weak transcription	NH-A	brain
16	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
17	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr4:26642400-26657000	Weak transcription	Fetal Lung	lung
21	chr4:26642400-26657200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr4:26642400-26659800	Weak transcription	Fetal Brain Male	brain
23	chr4:26642400-26662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr4:26642400-26663000	Weak transcription	Primary T helper cells PMA-I stimulated	--
25	chr4:26642400-26666600	Weak transcription	Left Ventricle	heart
26	chr4:26642400-26697400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
27	chr4:26642600-26656800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr4:26642600-26656800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
29	chr4:26642600-26656800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:26642600-26657000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:26642600-26657000	Weak transcription	Ovary	ovary
32	chr4:26642600-26661200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr4:26642600-26662000	Weak transcription	Osteobl	bone
34	chr4:26642600-26662200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr4:26642600-26662800	Weak transcription	Fetal Kidney	kidney
36	chr4:26642800-26656600	Weak transcription	Fetal Intestine Large	intestine
37	chr4:26642800-26657000	Weak transcription	Aorta	Aorta
38	chr4:26642800-26657200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
39	chr4:26642800-26658200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
40	chr4:26642800-26680000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr4:26642800-26680800	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr4:26643000-26656600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr4:26643000-26656800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
44	chr4:26643000-26657000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr4:26643000-26662200	Weak transcription	Primary T cells from cord blood	blood
46	chr4:26643400-26662000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr4:26643800-26656800	Weak transcription	Fetal Brain Female	brain
48	chr4:26643800-26656800	Weak transcription	Fetal Thymus	thymus
49	chr4:26643800-26656800	Weak transcription	Thymus	Thymus
50	chr4:26644600-26662200	Weak transcription	Muscle Satellite Cultured Cells	--

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