Variant report

Variant	rs10939128
Chromosome Location	chr4:26643576-26643577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 101 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:98)

rs_ID	r²[population]
rs10000211	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10939124	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10939132	0.85[EUR][1000 genomes]
rs10939134	0.83[EUR][1000 genomes]
rs10939135	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1129230	0.80[EUR][1000 genomes]
rs1135204	0.81[EUR][1000 genomes]
rs11721891	0.83[EUR][1000 genomes]
rs11724595	0.82[EUR][1000 genomes]
rs11726910	0.82[ASN][1000 genomes]
rs11733702	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11931159	0.84[EUR][1000 genomes]
rs11937465	0.82[EUR][1000 genomes]
rs11944010	0.82[EUR][1000 genomes]
rs12498454	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12501439	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12504472	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12505249	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12505393	0.82[ASN][1000 genomes]
rs12507314	0.82[EUR][1000 genomes]
rs12510371	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12510995	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12640312	0.82[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12640951	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12644574	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12647180	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12650361	0.92[EUR][1000 genomes]
rs13105574	0.95[AFR][1000 genomes];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13111381	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13111922	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13121299	0.95[AFR][1000 genomes];0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13121378	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13123511	0.80[EUR][1000 genomes]
rs13125612	0.85[EUR][1000 genomes]
rs13131355	0.83[EUR][1000 genomes]
rs13136955	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13138699	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13138712	0.99[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13146364	0.85[EUR][1000 genomes]
rs13146615	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13151477	0.80[EUR][1000 genomes]
rs1565303	0.98[EUR][1000 genomes]
rs1565304	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1619573	0.98[EUR][1000 genomes]
rs1641562	0.91[EUR][1000 genomes]
rs1861470	0.93[EUR][1000 genomes]
rs2111006	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2309413	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs260934	0.93[EUR][1000 genomes]
rs260935	0.93[EUR][1000 genomes]
rs260937	0.96[EUR][1000 genomes]
rs260939	0.93[EUR][1000 genomes]
rs260946	0.91[EUR][1000 genomes]
rs260948	0.93[EUR][1000 genomes]
rs260950	0.93[EUR][1000 genomes]
rs260952	0.94[EUR][1000 genomes]
rs260956	0.96[EUR][1000 genomes]
rs260958	0.97[EUR][1000 genomes]
rs260959	0.98[EUR][1000 genomes]
rs260960	0.98[EUR][1000 genomes]
rs2908823	0.94[EUR][1000 genomes]
rs34010107	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34241157	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs34832881	0.93[EUR][1000 genomes]
rs34837351	0.80[EUR][1000 genomes]
rs35232657	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs35445672	0.87[AFR][1000 genomes]
rs35654367	0.82[EUR][1000 genomes]
rs4234981	0.82[EUR][1000 genomes]
rs4321621	0.80[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4355378	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4365714	0.85[EUR][1000 genomes]
rs4437235	0.83[EUR][1000 genomes]
rs4467548	0.85[EUR][1000 genomes]
rs4527463	0.83[EUR][1000 genomes]
rs4590010	0.83[EUR][1000 genomes]
rs4692551	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56150091	0.82[EUR][1000 genomes]
rs60503601	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs60915838	0.84[EUR][1000 genomes]
rs61690082	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62300967	0.80[EUR][1000 genomes]
rs62300968	0.80[EUR][1000 genomes]
rs62409934	0.93[EUR][1000 genomes]
rs62412678	0.84[EUR][1000 genomes]
rs6448458	0.95[AFR][1000 genomes];0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs67655603	0.96[EUR][1000 genomes]
rs6821370	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6858652	0.82[EUR][1000 genomes]
rs7655144	0.85[EUR][1000 genomes]
rs7657453	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7658999	0.83[EUR][1000 genomes]
rs7672267	0.82[EUR][1000 genomes]
rs7677353	0.84[EUR][1000 genomes]
rs7683324	0.83[EUR][1000 genomes]
rs7687087	0.82[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9790514	0.83[EUR][1000 genomes]
rs9790776	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv522423	chr4:26625185-26706342	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv878768	chr4:26625185-26766687	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv524115	chr4:26631178-26706342	Weak transcription Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26606400-26656600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26608800-26643600	Weak transcription	Fetal Heart	heart
3	chr4:26609600-26649400	Weak transcription	Psoas Muscle	Psoas
4	chr4:26613800-26657200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr4:26616600-26662600	Weak transcription	Stomach Smooth Muscle	stomach
6	chr4:26618200-26657200	Weak transcription	Pancreas	Pancrea
7	chr4:26619600-26645600	Weak transcription	Spleen	Spleen
8	chr4:26620600-26643800	Weak transcription	Rectal Mucosa Donor 29	rectum
9	chr4:26622000-26643800	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr4:26622400-26645600	Weak transcription	NHLF	lung
11	chr4:26622400-26662400	Weak transcription	Right Ventricle	heart
12	chr4:26623000-26670400	Weak transcription	Gastric	stomach
13	chr4:26625600-26665600	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr4:26626000-26645000	Weak transcription	Brain Substantia Nigra	brain
15	chr4:26627600-26644400	Weak transcription	Rectal Smooth Muscle	rectum
16	chr4:26629000-26644400	Weak transcription	Rectal Mucosa Donor 31	rectum
17	chr4:26629200-26680800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
18	chr4:26629400-26656800	Weak transcription	Lung	lung
19	chr4:26632800-26643800	Weak transcription	Primary B cells from cord blood	blood
20	chr4:26633800-26657000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr4:26633800-26658600	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr4:26634000-26657000	Weak transcription	Brain Hippocampus Middle	brain
23	chr4:26635000-26675200	Weak transcription	NHDF-Ad	bronchial
24	chr4:26636000-26643600	Weak transcription	Liver	Liver
25	chr4:26637600-26649400	Weak transcription	Placenta	Placenta
26	chr4:26638600-26643600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr4:26638800-26644600	Strong transcription	Muscle Satellite Cultured Cells	--
28	chr4:26639000-26643600	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr4:26639200-26643800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr4:26639600-26643600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr4:26640000-26691400	Weak transcription	Colon Smooth Muscle	Colon
32	chr4:26640400-26651000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:26640800-26644400	Weak transcription	Brain Anterior Caudate	brain
34	chr4:26640800-26645000	Weak transcription	Primary T cells fromperipheralblood	blood
35	chr4:26640800-26662800	Weak transcription	NH-A	brain
36	chr4:26641000-26645600	Weak transcription	Adipose Nuclei	Adipose
37	chr4:26641000-26661400	Weak transcription	HSMMtube	muscle
38	chr4:26641000-26662000	Weak transcription	Primary T helper cells fromperipheralblood	blood
39	chr4:26641000-26664000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr4:26641800-26643800	Strong transcription	Thymus	Thymus
41	chr4:26641800-26644800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr4:26642000-26649000	Weak transcription	HUES64 Cell Line	embryonic stem cell
43	chr4:26642000-26662000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr4:26642400-26645600	Weak transcription	Cortex derived primary cultured neurospheres	brain
45	chr4:26642400-26649600	Weak transcription	Dnd41	blood
46	chr4:26642400-26657000	Weak transcription	Fetal Lung	lung
47	chr4:26642400-26657200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr4:26642400-26659800	Weak transcription	Fetal Brain Male	brain
49	chr4:26642400-26662600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
50	chr4:26642400-26663000	Weak transcription	Primary T helper cells PMA-I stimulated	--

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