Variant report

Variant	rs12640951
Chromosome Location	chr4:26587318-26587319
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:52)

rs_ID	r²[population]
rs10000211	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939124	0.93[AFR][1000 genomes];0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10939128	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11733702	0.84[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12501439	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12505249	0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12510371	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12510995	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12640312	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12647180	0.81[EUR][1000 genomes]
rs12650361	0.97[EUR][1000 genomes]
rs13105574	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13111381	0.81[EUR][1000 genomes]
rs13111922	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121299	0.95[AFR][1000 genomes];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13121378	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13136955	0.87[AFR][1000 genomes];0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs13138699	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13138712	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13146615	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1565303	0.91[EUR][1000 genomes]
rs1565304	0.89[EUR][1000 genomes]
rs1619573	0.91[EUR][1000 genomes]
rs1641562	0.84[EUR][1000 genomes]
rs1861470	0.88[EUR][1000 genomes]
rs2111006	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2309413	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs260934	0.88[EUR][1000 genomes]
rs260935	0.88[EUR][1000 genomes]
rs260937	0.89[EUR][1000 genomes]
rs260939	0.85[EUR][1000 genomes]
rs260946	0.91[EUR][1000 genomes]
rs260948	0.96[EUR][1000 genomes]
rs260950	0.96[EUR][1000 genomes]
rs260952	0.93[EUR][1000 genomes]
rs260956	0.91[EUR][1000 genomes]
rs260958	0.92[EUR][1000 genomes]
rs260959	0.91[EUR][1000 genomes]
rs260960	0.91[EUR][1000 genomes]
rs2908823	0.94[EUR][1000 genomes]
rs34832881	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35232657	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs35445672	0.92[AFR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4355378	0.81[EUR][1000 genomes]
rs4692551	0.80[EUR][1000 genomes]
rs61690082	0.81[EUR][1000 genomes]
rs62409934	0.92[EUR][1000 genomes]
rs6448458	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67655603	0.91[EUR][1000 genomes]
rs6821370	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7657453	0.81[EUR][1000 genomes]
rs7687087	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]

No data

Chromatin state (count:50 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26585000-26587600	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr4:26585000-26588800	Active TSS	Fetal Thymus	thymus
3	chr4:26585400-26587600	Active TSS	NHLF	lung
4	chr4:26585400-26587800	Active TSS	NH-A	brain
5	chr4:26585400-26589000	Active TSS	Muscle Satellite Cultured Cells	--
6	chr4:26585600-26587400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:26586200-26588000	Flanking Active TSS	Dnd41	blood
8	chr4:26586400-26587400	Weak transcription	Small Intestine	intestine
9	chr4:26586400-26587600	Enhancers	Primary T helper cells fromperipheralblood	blood
10	chr4:26586400-26587800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr4:26586400-26589800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr4:26586400-26590800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr4:26586400-26591000	Weak transcription	Esophagus	oesophagus
14	chr4:26586400-26591000	Weak transcription	Gastric	stomach
15	chr4:26586600-26587600	Enhancers	Primary T cells fromperipheralblood	blood
16	chr4:26586600-26588000	Enhancers	Primary T helper cells PMA-I stimulated	--
17	chr4:26586600-26588200	Active TSS	Osteobl	bone
18	chr4:26586600-26590600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
19	chr4:26586600-26590800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr4:26586600-26590800	Weak transcription	H1 Cell Line	embryonic stem cell
21	chr4:26586600-26590800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr4:26586600-26591000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
23	chr4:26586600-26601000	Weak transcription	Primary hematopoietic stem cells	blood
24	chr4:26586800-26587400	Enhancers	HUVEC	blood vessel
25	chr4:26586800-26587800	Weak transcription	Liver	Liver
26	chr4:26586800-26587800	Enhancers	Colon Smooth Muscle	Colon
27	chr4:26586800-26588400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr4:26586800-26590800	Weak transcription	K562	blood
29	chr4:26586800-26591000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
30	chr4:26586800-26591200	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr4:26586800-26591400	Weak transcription	A549	lung
32	chr4:26586800-26592400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr4:26586800-26592600	Weak transcription	HSMM	muscle
34	chr4:26586800-26593400	Weak transcription	Duodenum Smooth Muscle	Duodenum
35	chr4:26587000-26587400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
36	chr4:26587000-26587400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr4:26587000-26587600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:26587000-26591000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr4:26587000-26591000	Weak transcription	HMEC	breast
40	chr4:26587000-26591000	Weak transcription	NHEK	skin
41	chr4:26587000-26602000	Weak transcription	Pancreatic Islets	Pancreatic Islet
42	chr4:26587000-26603200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:26587200-26587400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr4:26587200-26587600	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
45	chr4:26587200-26587600	Enhancers	Lung	lung
46	chr4:26587200-26587600	Flanking Active TSS	Thymus	Thymus
47	chr4:26587200-26587800	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
48	chr4:26587200-26590800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
49	chr4:26587200-26591000	Weak transcription	NHDF-Ad	bronchial
50	chr4:26587200-26598000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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