Variant report

Variant	rs11732215
Chromosome Location	chr4:106234854-106234855
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs11721948	0.91[JPT][hapmap]
rs11726786	0.91[JPT][hapmap]
rs11735256	1.00[JPT][hapmap]
rs12645531	0.97[AFR][1000 genomes];0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1391439	0.91[JPT][hapmap]
rs2007403	1.00[JPT][hapmap]
rs2047409	1.00[JPT][hapmap]
rs2454206	1.00[JPT][hapmap]
rs2466917	0.93[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2647231	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2647232	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647233	0.87[EUR][1000 genomes]
rs2647235	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2647236	0.95[AFR][1000 genomes];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2647250	0.83[JPT][hapmap]
rs2647251	0.91[JPT][hapmap]
rs2647257	1.00[JPT][hapmap]
rs2647258	0.95[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs2647259	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2647260	1.00[AFR][1000 genomes];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2647262	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2647263	0.81[EUR][1000 genomes]
rs2647266	0.86[EUR][1000 genomes]
rs2647268	0.91[JPT][hapmap]
rs2726476	0.83[EUR][1000 genomes]
rs2726478	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2726480	0.87[EUR][1000 genomes]
rs2726481	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2726489	0.86[EUR][1000 genomes]
rs2726490	0.86[EUR][1000 genomes]
rs2726491	1.00[JPT][hapmap]
rs2955171	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35740007	0.82[AFR][1000 genomes]
rs36131630	0.88[AFR][1000 genomes]
rs6818637	1.00[JPT][hapmap]
rs6855629	1.00[JPT][hapmap]
rs7670522	1.00[JPT][hapmap]
rs7683416	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879698	chr4:106155751-106309224	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv879699	chr4:106212562-106698892	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases
6	nsv830027	chr4:106222010-106406738	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
7	esv2004569	chr4:106234710-106235136	Weak transcription	n/a	n/a	inside rSNPs	diseases
8	esv3526467	chr4:106234759-106235021	Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106234400-106238000	Weak transcription	Left Ventricle	heart
2	chr4:106234400-106238000	Weak transcription	Pancreas	Pancrea
3	chr4:106234400-106266600	Weak transcription	Skeletal Muscle Female	skeletal muscle

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