Variant report

Variant	rs11726786
Chromosome Location	chr4:106120756-106120757
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:106114330..106115965-chr4:106120710..106122443,2	MCF-7	breast:
2	chr4:106120527..106122052-chr4:106133010..106134880,2	MCF-7	breast:

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs1032625	0.90[ASN][1000 genomes]
rs10461139	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11721948	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11735256	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs12645144	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13109676	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13147502	0.84[ASN][1000 genomes]
rs1391439	1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[ASN][1000 genomes]
rs2007403	0.92[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs2047409	0.92[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs2189234	0.80[CEU][hapmap]
rs2454205	0.89[ASN][1000 genomes]
rs2454206	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647244	0.91[ASN][1000 genomes]
rs2647250	0.85[CHB][hapmap];0.93[JPT][hapmap];0.91[ASN][1000 genomes]
rs2647251	0.85[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647257	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2647268	0.92[CEU][hapmap];0.83[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2726459	0.91[ASN][1000 genomes]
rs2726460	0.93[ASN][1000 genomes]
rs2726491	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2726519	0.96[ASN][1000 genomes]
rs2726520	0.96[ASN][1000 genomes]
rs2726521	0.89[ASN][1000 genomes]
rs34104813	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4699165	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs55838312	0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62330911	0.93[ASN][1000 genomes]
rs62331159	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62332760	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6533181	0.80[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6818637	1.00[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6855629	0.81[CEU][hapmap];0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7658539	0.97[ASN][1000 genomes]
rs7661349	0.87[EUR][1000 genomes]
rs7670522	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs7674220	0.82[ASN][1000 genomes]
rs7683416	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv830025	chr4:105988876-106137946	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106084800-106127400	Weak transcription	Brain Germinal Matrix	brain
2	chr4:106101000-106146600	Weak transcription	Spleen	Spleen
3	chr4:106102800-106127400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:106106000-106135000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr4:106106200-106155000	Weak transcription	Primary T cells fromperipheralblood	blood
6	chr4:106106600-106125800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
7	chr4:106108000-106123000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:106111800-106127400	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr4:106112200-106127200	Weak transcription	Primary T cells from cord blood	blood
10	chr4:106112400-106127000	Weak transcription	Fetal Muscle Leg	muscle
11	chr4:106112800-106127400	Weak transcription	Placenta	Placenta
12	chr4:106113000-106126800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr4:106113000-106127200	Weak transcription	Fetal Muscle Trunk	muscle
14	chr4:106113000-106154800	Weak transcription	Fetal Thymus	thymus
15	chr4:106113200-106136000	Weak transcription	Brain Anterior Caudate	brain
16	chr4:106113200-106136000	Weak transcription	Brain Substantia Nigra	brain
17	chr4:106113200-106136800	Weak transcription	Fetal Kidney	kidney
18	chr4:106113200-106146600	Weak transcription	Primary T helper cells fromperipheralblood	blood
19	chr4:106113400-106123800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
20	chr4:106113600-106136000	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
21	chr4:106113600-106173800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
22	chr4:106113600-106195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
23	chr4:106114400-106129000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
24	chr4:106114400-106136200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr4:106114400-106155200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr4:106114600-106127400	Weak transcription	Right Ventricle	heart
27	chr4:106114600-106127400	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:106114600-106127400	Weak transcription	Skeletal Muscle Female	skeletal muscle
29	chr4:106114600-106134400	Weak transcription	Liver	Liver
30	chr4:106114600-106136000	Weak transcription	Pancreas	Pancrea
31	chr4:106114600-106145400	Weak transcription	Adipose Nuclei	Adipose
32	chr4:106114600-106155600	Weak transcription	Esophagus	oesophagus
33	chr4:106116400-106130000	Weak transcription	HMEC	breast
34	chr4:106116400-106131600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
35	chr4:106117600-106136000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr4:106117800-106124400	Weak transcription	Fetal Lung	lung
37	chr4:106118000-106136200	Weak transcription	Brain Hippocampus Middle	brain
38	chr4:106118000-106136800	Weak transcription	HSMMtube	muscle
39	chr4:106118000-106155400	Weak transcription	Duodenum Mucosa	Duodenum
40	chr4:106118200-106135600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr4:106118400-106123600	Weak transcription	Primary B cells from peripheral blood	blood
42	chr4:106118400-106135800	Weak transcription	Primary T helper cells PMA-I stimulated	--
43	chr4:106118600-106127000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr4:106118800-106121000	Weak transcription	Primary hematopoietic stem cells	blood
45	chr4:106118800-106123000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr4:106118800-106123600	Weak transcription	Pancreatic Islets	Pancreatic Islet
47	chr4:106118800-106127000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
48	chr4:106118800-106127000	Weak transcription	Fetal Heart	heart
49	chr4:106118800-106127200	Weak transcription	Left Ventricle	heart
50	chr4:106118800-106127400	Weak transcription	Primary B cells from cord blood	blood

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