Variant report

Variant	rs2726460
Chromosome Location	chr4:106185275-106185276
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:106182085..106183993-chr4:106184382..106185952,2	MCF-7	breast:
2	chr4:106184567..106187118-chr4:106192794..106195271,2	MCF-7	breast:
3	chr4:106176096..106178762-chr4:106183057..106185606,2	MCF-7	breast:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:41)

rs_ID	r²[population]
rs1032625	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10461139	0.95[ASN][1000 genomes]
rs11097882	0.83[ASN][1000 genomes]
rs11721948	0.90[ASN][1000 genomes]
rs11726786	0.93[ASN][1000 genomes]
rs11735256	0.86[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs12645144	0.98[ASN][1000 genomes]
rs13109676	0.93[ASN][1000 genomes]
rs13147502	0.88[ASN][1000 genomes]
rs1391439	0.81[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs2007403	0.83[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2047409	0.94[ASN][1000 genomes]
rs2133086	0.86[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2454205	0.85[AFR][1000 genomes];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2454206	0.91[ASN][1000 genomes]
rs2647244	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2647246	0.90[EUR][1000 genomes]
rs2647247	0.90[EUR][1000 genomes]
rs2647248	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2647250	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2647251	0.91[ASN][1000 genomes]
rs2647257	0.91[ASN][1000 genomes]
rs2647268	0.83[ASN][1000 genomes]
rs2726459	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2726491	0.84[ASN][1000 genomes]
rs2726519	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726520	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2726521	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34104813	0.97[ASN][1000 genomes]
rs4699165	0.89[ASN][1000 genomes]
rs55838312	0.92[ASN][1000 genomes]
rs62330911	0.87[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62331159	0.91[ASN][1000 genomes]
rs62332760	0.91[ASN][1000 genomes]
rs6818637	0.86[ASN][1000 genomes]
rs6855629	0.93[ASN][1000 genomes]
rs7658539	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7670522	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7674220	0.82[ASN][1000 genomes]
rs7678440	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7683416	0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv461609	chr4:105869548-106366209	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
2	nsv470063	chr4:105869548-106366209	Transcr. at gene 5' and 3' Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
3	nsv595007	chr4:105869548-106366209	Weak transcription ZNF genes & repeats Strong transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv879698	chr4:106155751-106309224	Weak transcription Genic enhancers Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	esv2138529	chr4:106185275-106185276	Weak transcription Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:106113600-106195800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
2	chr4:106142000-106190800	Weak transcription	Small Intestine	intestine
3	chr4:106148000-106192800	Weak transcription	Psoas Muscle	Psoas
4	chr4:106150200-106191400	Weak transcription	HUVEC	blood vessel
5	chr4:106154000-106198800	Weak transcription	Hela-S3	cervix
6	chr4:106156800-106190800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
7	chr4:106156800-106196200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
8	chr4:106157000-106186000	Weak transcription	NH-A	brain
9	chr4:106157000-106190400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
10	chr4:106157400-106193600	Weak transcription	Colonic Mucosa	Colon
11	chr4:106157800-106190600	Weak transcription	NHLF	lung
12	chr4:106158200-106186600	Weak transcription	Stomach Mucosa	stomach
13	chr4:106158200-106190600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr4:106158200-106190600	Weak transcription	NHEK	skin
15	chr4:106158200-106190800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr4:106158200-106190800	Weak transcription	Pancreas	Pancrea
17	chr4:106158200-106190800	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:106158200-106190800	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr4:106158400-106190000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr4:106158400-106190800	Weak transcription	Gastric	stomach
21	chr4:106158400-106190800	Weak transcription	Lung	lung
22	chr4:106162800-106190800	Weak transcription	Fetal Heart	heart
23	chr4:106163400-106196400	Weak transcription	Brain Angular Gyrus	brain
24	chr4:106163600-106190800	Weak transcription	Brain Inferior Temporal Lobe	brain
25	chr4:106165000-106189800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr4:106165200-106190800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr4:106165400-106190000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:106165400-106190800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr4:106167400-106193400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr4:106168000-106186200	Weak transcription	Muscle Satellite Cultured Cells	--
31	chr4:106168000-106190600	Weak transcription	HSMMtube	muscle
32	chr4:106168000-106190600	Weak transcription	Osteobl	bone
33	chr4:106168000-106190800	Weak transcription	Aorta	Aorta
34	chr4:106168400-106186000	Weak transcription	HSMM	muscle
35	chr4:106168600-106193400	Weak transcription	NHDF-Ad	bronchial
36	chr4:106172000-106190800	Weak transcription	Esophagus	oesophagus
37	chr4:106173400-106190600	Weak transcription	Ovary	ovary
38	chr4:106176000-106189800	Weak transcription	Fetal Intestine Small	intestine
39	chr4:106176000-106193200	Weak transcription	Right Ventricle	heart
40	chr4:106176400-106190600	Weak transcription	Fetal Brain Female	brain
41	chr4:106176400-106190800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
42	chr4:106176600-106191200	Weak transcription	HMEC	breast
43	chr4:106176800-106190800	Weak transcription	Fetal Brain Male	brain
44	chr4:106178000-106185800	Weak transcription	Brain Anterior Caudate	brain
45	chr4:106178000-106190600	Weak transcription	Brain Hippocampus Middle	brain
46	chr4:106178000-106201000	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr4:106178600-106190400	Weak transcription	Brain Germinal Matrix	brain
48	chr4:106178600-106190800	Weak transcription	Pancreatic Islets	Pancreatic Islet
49	chr4:106179000-106190600	Weak transcription	Brain Cingulate Gyrus	brain
50	chr4:106179200-106201000	Strong transcription	Primary monocytes fromperipheralblood	blood

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