Variant report

Variant	rs11735392
Chromosome Location	chr4:130242734-130242735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs58037776	0.89[ASN][1000 genomes]
rs59541011	0.87[ASN][1000 genomes]
rs62317263	0.91[ASN][1000 genomes]
rs62319322	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130241000-130243600	Weak transcription	HUES64 Cell Line	embryonic stem cell
2	chr4:130241200-130243600	Weak transcription	H1 Cell Line	embryonic stem cell
3	chr4:130241200-130244200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr4:130241400-130243400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr4:130241400-130243600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr4:130241400-130243800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:130241400-130243800	Weak transcription	HUES48 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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