Variant report

Variant	rs58037776
Chromosome Location	chr4:130243662-130243663
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11735392	0.89[ASN][1000 genomes]
rs56131981	0.84[EUR][1000 genomes]
rs59541011	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62317263	1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62317270	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62319322	1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534538	chr4:129799138-130431688	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv830058	chr4:130136025-130315471	Weak transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv879932	chr4:130167642-130264517	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:130241200-130244200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr4:130241400-130243800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr4:130241400-130243800	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr4:130243400-130245400	Enhancers	iPS-18 Cell Line	embryonic stem cell
5	chr4:130243600-130244400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr4:130243600-130244400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr4:130243600-130244600	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr4:130243600-130244800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr4:130243600-130244800	Enhancers	iPS-20b Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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