Variant report

Variant	rs11735635
Chromosome Location	chr4:128850073-128850074
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 108 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:91)

rs_ID	r²[population]
rs10024450	0.88[ASN][1000 genomes]
rs10493147	0.95[CHB][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs1064205	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs10857126	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10857128	1.00[CEU][hapmap]
rs10857129	1.00[CEU][hapmap]
rs11098936	0.84[CEU][hapmap]
rs11098940	0.91[CEU][hapmap]
rs11098947	0.92[CEU][hapmap]
rs11098950	0.96[CEU][hapmap]
rs11725843	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12503257	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12504266	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12504825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12505717	1.00[CEU][hapmap]
rs12506549	1.00[CEU][hapmap]
rs12509092	1.00[CEU][hapmap]
rs12510785	0.92[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12511932	0.84[CEU][hapmap]
rs12641548	1.00[CEU][hapmap]
rs12645068	0.82[EUR][1000 genomes]
rs12645636	0.88[CEU][hapmap]
rs13102049	1.00[CEU][hapmap]
rs13127610	0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes]
rs13135183	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13135526	0.84[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1380154	0.90[CHB][hapmap];0.95[JPT][hapmap];0.83[ASN][1000 genomes]
rs1380156	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[ASN][1000 genomes]
rs1459048	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1459050	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs1585312	0.84[CEU][hapmap]
rs16997980	1.00[CEU][hapmap]
rs17012739	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1870422	0.92[CEU][hapmap]
rs1870686	1.00[CEU][hapmap]
rs1903104	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1975878	0.96[CEU][hapmap]
rs1975879	0.96[CEU][hapmap]
rs1993722	1.00[CEU][hapmap]
rs2085655	0.87[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2087446	0.85[EUR][1000 genomes]
rs2126112	0.92[CEU][hapmap]
rs2305957	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2305958	0.84[CEU][hapmap]
rs2306054	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs2306055	1.00[CEU][hapmap]
rs3214038	0.95[CHB][hapmap];1.00[JPT][hapmap]
rs34625382	0.85[EUR][1000 genomes]
rs3733320	1.00[CEU][hapmap]
rs3775982	0.82[CEU][hapmap]
rs3811740	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3811741	0.95[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs3816588	0.87[CEU][hapmap]
rs4435753	0.84[CEU][hapmap]
rs4833391	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.83[ASN][1000 genomes]
rs4833393	0.88[EUR][1000 genomes]
rs4833395	1.00[CEU][hapmap]
rs4834217	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4834223	0.88[CEU][hapmap]
rs4834224	0.96[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.96[YRI][hapmap]
rs4834225	0.88[CEU][hapmap]
rs4834226	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs4834229	1.00[CEU][hapmap]
rs4834231	0.92[CEU][hapmap]
rs4834234	1.00[CEU][hapmap]
rs62335590	0.80[EUR][1000 genomes]
rs6534638	0.91[CEU][hapmap];0.91[CHB][hapmap];1.00[JPT][hapmap]
rs6534647	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6534648	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs6534655	0.84[EUR][1000 genomes]
rs6534656	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6534658	0.81[EUR][1000 genomes]
rs6534659	1.00[CEU][hapmap]
rs6815890	1.00[CEU][hapmap]
rs6839292	0.83[CEU][hapmap]
rs6839370	1.00[CEU][hapmap]
rs6846535	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6851796	1.00[CEU][hapmap]
rs7441217	0.86[ASN][1000 genomes]
rs748630	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7654638	0.84[CEU][hapmap]
rs7661888	1.00[CEU][hapmap];0.89[YRI][hapmap]
rs7671131	0.88[CEU][hapmap]
rs7671590	0.92[CEU][hapmap]
rs7684368	0.92[CEU][hapmap]
rs7686130	0.92[CEU][hapmap]
rs7692740	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs769293	0.92[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs959822	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9968459	1.00[CEU][hapmap];0.88[CHB][hapmap];0.95[JPT][hapmap]
rs9995738	0.84[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879915	chr4:128167093-129150590	Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
2	nsv817326	chr4:128292216-128915201	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv879922	chr4:128554404-128901402	Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv879923	chr4:128554404-129068179	Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
5	esv1801492	chr4:128566686-128934513	Weak transcription ZNF genes & repeats Bivalent/Poised TSS Strong transcription Enhancers Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
6	esv1792644	chr4:128566686-129133826	Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
7	esv1795770	chr4:128566686-129145581	Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
8	esv1793579	chr4:128577439-128871309	Weak transcription ZNF genes & repeats Strong transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
9	esv3431515	chr4:128657260-128932577	Enhancers Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
10	nsv532740	chr4:128710011-129035335	Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
11	esv3416036	chr4:128782694-129133956	Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
12	nsv1033701	chr4:128803159-129095018	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases
13	nsv1019193	chr4:128810527-128949320	Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
14	esv1841203	chr4:128817558-129043809	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
15	nsv1029890	chr4:128828468-129041302	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
16	esv1817670	chr4:128850073-129012181	Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
17	esv1821180	chr4:128850073-129012181	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:118 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:128818800-128863000	Weak transcription	A549	lung
2	chr4:128831200-128884600	Weak transcription	Spleen	Spleen
3	chr4:128832600-128885200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr4:128833400-128858000	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr4:128833600-128867600	Weak transcription	NHLF	lung
6	chr4:128835000-128885200	Weak transcription	Brain Hippocampus Middle	brain
7	chr4:128836000-128864000	Weak transcription	Small Intestine	intestine
8	chr4:128836400-128850600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr4:128836400-128863000	Weak transcription	Fetal Kidney	kidney
10	chr4:128836800-128884600	Weak transcription	Esophagus	oesophagus
11	chr4:128836800-128885200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr4:128837000-128868600	Weak transcription	Pancreas	Pancrea
13	chr4:128837000-128885800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr4:128837400-128885800	Weak transcription	Colon Smooth Muscle	Colon
15	chr4:128837600-128861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr4:128837800-128885200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr4:128838000-128865400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
18	chr4:128838000-128866000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr4:128838400-128885200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr4:128838400-128885800	Weak transcription	Brain Angular Gyrus	brain
21	chr4:128838800-128862600	Weak transcription	HSMMtube	muscle
22	chr4:128838800-128885200	Weak transcription	Right Ventricle	heart
23	chr4:128839000-128854800	Weak transcription	Fetal Heart	heart
24	chr4:128839800-128861800	Weak transcription	HMEC	breast
25	chr4:128840000-128885800	Weak transcription	Aorta	Aorta
26	chr4:128840600-128885200	Weak transcription	Rectal Smooth Muscle	rectum
27	chr4:128840800-128885200	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr4:128841600-128885200	Weak transcription	Hela-S3	cervix
29	chr4:128841800-128885200	Weak transcription	Gastric	stomach
30	chr4:128842000-128852600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
31	chr4:128842000-128862000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
32	chr4:128842000-128862800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr4:128842400-128863000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
34	chr4:128842400-128881200	Weak transcription	Colonic Mucosa	Colon
35	chr4:128842600-128858000	Weak transcription	NHDF-Ad	bronchial
36	chr4:128842600-128879200	Weak transcription	K562	blood
37	chr4:128842800-128858200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
38	chr4:128842800-128862200	Weak transcription	Fetal Brain Female	brain
39	chr4:128842800-128885400	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr4:128842800-128885600	Weak transcription	Psoas Muscle	Psoas
41	chr4:128843000-128850400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
42	chr4:128843000-128851000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr4:128843000-128852800	Weak transcription	HepG2	liver
44	chr4:128843000-128858000	Weak transcription	NH-A	brain
45	chr4:128843000-128860400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
46	chr4:128843000-128863200	Weak transcription	GM12878-XiMat	blood
47	chr4:128843000-128875800	Weak transcription	HSMM	muscle
48	chr4:128843000-128885200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
49	chr4:128843000-128885200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
50	chr4:128843000-128885200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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