Variant report
Variant | rs13127610 |
---|---|
Chromosome Location | chr4:128975358-128975359 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
No data |
(count:2 , 50 per page) page:
1
No data |
No data |
No data |
Variant related genes | Relation type |
---|---|
ENSG00000138709 | Chromatin interaction |
rs_ID | r2[population] |
---|---|
rs10000960 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs10001048 | 0.83[CEU][hapmap];0.81[GIH][hapmap] |
rs1001503 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs10019554 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs10019840 | 0.82[CEU][hapmap] |
rs10026899 | 0.92[CEU][hapmap] |
rs1015111 | 0.83[CHB][hapmap];0.83[CHD][hapmap];0.88[GIH][hapmap] |
rs10518529 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs1064205 | 0.91[CEU][hapmap];0.93[GIH][hapmap] |
rs10857128 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs10857129 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.98[MKK][hapmap] |
rs11098940 | 0.82[CEU][hapmap] |
rs11098947 | 0.83[CEU][hapmap] |
rs11098950 | 0.86[CEU][hapmap] |
rs11723915 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs11727049 | 0.83[CEU][hapmap];0.81[GIH][hapmap] |
rs11727305 | 0.91[CEU][hapmap] |
rs11735635 | 0.92[CEU][hapmap];0.95[CHB][hapmap];0.89[JPT][hapmap];0.82[EUR][1000 genomes] |
rs11735810 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs11737026 | 0.83[GIH][hapmap] |
rs12504266 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];0.81[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs12504825 | 0.92[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.83[EUR][1000 genomes] |
rs12505717 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs12506549 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs12509092 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs12510785 | 0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
rs12641548 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs12645577 | 0.92[CEU][hapmap];0.93[GIH][hapmap] |
rs12645636 | 0.87[CEU][hapmap];0.88[TSI][hapmap] |
rs12650556 | 0.85[AMR][1000 genomes];0.85[ASN][1000 genomes] |
rs13102049 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs13138581 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs13139182 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs13147546 | 0.96[ASN][1000 genomes] |
rs16997980 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs17012739 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.93[CHD][hapmap];0.85[GIH][hapmap];0.90[JPT][hapmap];0.80[MEX][hapmap];0.89[MKK][hapmap];0.91[TSI][hapmap] |
rs1870686 | 0.91[CEU][hapmap];0.88[GIH][hapmap] |
rs1870687 | 0.91[CEU][hapmap];0.95[GIH][hapmap] |
rs1975878 | 0.87[CEU][hapmap];0.93[GIH][hapmap] |
rs1975879 | 0.87[CEU][hapmap];0.90[GIH][hapmap] |
rs1993722 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs2056470 | 0.83[GIH][hapmap] |
rs2061570 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs2061571 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs2061572 | 0.83[GIH][hapmap] |
rs2126112 | 0.83[CEU][hapmap];0.81[GIH][hapmap] |
rs2172813 | 0.91[CEU][hapmap];0.95[GIH][hapmap] |
rs2306054 | 0.91[CEU][hapmap];0.95[GIH][hapmap] |
rs2306055 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs2391231 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.98[MKK][hapmap] |
rs3733320 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs3811740 | 0.92[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
rs3811741 | 0.86[CHB][hapmap];0.93[CHD][hapmap];0.90[JPT][hapmap];0.89[MKK][hapmap] |
rs4383632 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs4385082 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs4484314 | 0.87[CEU][hapmap];0.95[GIH][hapmap] |
rs4493552 | 0.83[CEU][hapmap] |
rs4833393 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs4833395 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs4834223 | 0.87[CEU][hapmap];0.85[EUR][1000 genomes] |
rs4834224 | 0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.88[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs4834225 | 0.87[CEU][hapmap];0.86[GIH][hapmap];0.88[TSI][hapmap] |
rs4834226 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs4834229 | 0.92[CEU][hapmap] |
rs4834231 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs4834234 | 0.92[CEU][hapmap] |
rs4975239 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6534648 | 0.91[CEU][hapmap];0.86[CHB][hapmap];0.90[JPT][hapmap] |
rs6534656 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6534658 | 0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs6534659 | 0.92[CEU][hapmap];0.95[GIH][hapmap];0.80[EUR][1000 genomes] |
rs6534668 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6534669 | 0.86[GIH][hapmap] |
rs6534670 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6811718 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs6815890 | 0.92[CEU][hapmap] |
rs6818467 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6829891 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6839292 | 0.83[CEU][hapmap] |
rs6839370 | 0.91[CEU][hapmap] |
rs6846535 | 0.85[AFR][1000 genomes];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs6849546 | 0.91[CEU][hapmap];0.95[GIH][hapmap] |
rs6851796 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs6856312 | 0.92[CEU][hapmap];0.93[GIH][hapmap] |
rs7441217 | 0.81[AFR][1000 genomes] |
rs748630 | 1.00[ASW][hapmap];0.96[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.88[GIH][hapmap];0.90[JPT][hapmap];0.93[LWK][hapmap];0.95[MEX][hapmap];0.96[MKK][hapmap];0.94[TSI][hapmap];1.00[YRI][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7661888 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |
rs7686130 | 0.83[CEU][hapmap];0.83[GIH][hapmap] |
rs7692740 | 0.96[CEU][hapmap];0.91[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.84[AFR][1000 genomes];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes] |
rs7692797 | 0.80[EUR][1000 genomes] |
rs959822 | 0.95[CEU][hapmap];0.91[CHB][hapmap];0.95[CHD][hapmap];0.81[GIH][hapmap];0.90[JPT][hapmap];0.90[MEX][hapmap];0.94[TSI][hapmap];0.86[EUR][1000 genomes] |
rs9993435 | 0.92[CEU][hapmap];0.95[GIH][hapmap] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv879915 | chr4:128167093-129150590 | Strong transcription Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 48 gene(s) | inside rSNPs | diseases |
2 | nsv879923 | chr4:128554404-129068179 | Enhancers Weak transcription Strong transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
3 | esv1792644 | chr4:128566686-129133826 | Enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
4 | esv1795770 | chr4:128566686-129145581 | Bivalent Enhancer Strong transcription Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 44 gene(s) | inside rSNPs | diseases |
5 | nsv532740 | chr4:128710011-129035335 | Weak transcription Flanking Active TSS Strong transcription Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
6 | esv3416036 | chr4:128782694-129133956 | Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 32 gene(s) | inside rSNPs | diseases |
7 | nsv1033701 | chr4:128803159-129095018 | Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 31 gene(s) | inside rSNPs | diseases |
8 | esv1841203 | chr4:128817558-129043809 | Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
9 | nsv1029890 | chr4:128828468-129041302 | Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
10 | esv1817670 | chr4:128850073-129012181 | Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
11 | esv1821180 | chr4:128850073-129012181 | Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 28 gene(s) | inside rSNPs | diseases |
12 | nsv1018952 | chr4:128850790-129082821 | Active TSS Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
13 | nsv595388 | chr4:128853913-129084831 | Weak transcription Active TSS Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 29 gene(s) | inside rSNPs | diseases |
14 | nsv1019555 | chr4:128901614-129088903 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
15 | esv3390887 | chr4:128932563-129207255 | Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 25 gene(s) | inside rSNPs | diseases |
16 | esv1800378 | chr4:128954647-128986874 | Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
17 | esv1801389 | chr4:128954647-128986874 | Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
18 | esv1802601 | chr4:128954647-128986874 | Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
19 | esv3353674 | chr4:128958396-128983454 | Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
20 | esv3430549 | chr4:128958396-128987680 | Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
21 | esv3385008 | chr4:128959396-128991050 | Flanking Active TSS Enhancers Active TSS Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
22 | esv1795256 | chr4:128960569-128983211 | Enhancers Active TSS Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
23 | esv1797884 | chr4:128960569-128983211 | Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
24 | esv1800439 | chr4:128972357-128986874 | Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr4:128887600-128981200 | Weak transcription | Psoas Muscle | Psoas |
2 | chr4:128951400-128981800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |
3 | chr4:128968800-128975400 | Weak transcription | iPS DF 19.11 Cell Line | embryonic stem cell |
4 | chr4:128974600-128976200 | Enhancers | ES-I3 Cell Line | embryonic stem cell |