Variant report
| Variant | rs11736008 |
|---|---|
| Chromosome Location | chr4:46736853-46736854 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr4:46733082..46735429-chr4:46735919..46738940,3 | K562 | blood: |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:22)
| rs_ID | r2[population] |
|---|---|
| rs11725004 | 0.83[EUR][1000 genomes] |
| rs11726563 | 1.00[CEU][hapmap] |
| rs11735302 | 0.81[EUR][1000 genomes] |
| rs11737113 | 0.88[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs17598581 | 0.95[CEU][hapmap];0.81[CHB][hapmap] |
| rs17598602 | 0.85[YRI][hapmap] |
| rs17598636 | 0.85[YRI][hapmap] |
| rs4260511 | 0.89[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs4264808 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4266263 | 0.80[EUR][1000 genomes] |
| rs4282138 | 0.81[EUR][1000 genomes] |
| rs4395475 | 1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap] |
| rs4414926 | 0.89[AMR][1000 genomes];0.86[EUR][1000 genomes] |
| rs4423852 | 0.94[CEU][hapmap] |
| rs4453910 | 0.89[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs62302753 | 0.81[EUR][1000 genomes] |
| rs62302754 | 0.83[EUR][1000 genomes] |
| rs62302755 | 0.83[EUR][1000 genomes] |
| rs62302756 | 0.83[EUR][1000 genomes] |
| rs62303490 | 0.88[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs62303494 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs62303509 | 0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv878998 | chr4:46565663-46823634 | Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv878999 | chr4:46565663-46860626 | Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv461356 | chr4:46635167-46846042 | Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 4 | nsv594117 | chr4:46635167-46846042 | Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv879000 | chr4:46635167-46890046 | Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
