Variant report

Variant	rs4395475
Chromosome Location	chr4:46742649-46742650
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11725004	0.81[EUR][1000 genomes]
rs11726563	1.00[ASW][hapmap];1.00[CEU][hapmap];0.83[CHB][hapmap];0.81[TSI][hapmap]
rs11736008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap]
rs11737113	0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17598581	0.95[CEU][hapmap];0.84[CHB][hapmap]
rs4260511	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4264808	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4414926	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4423852	0.94[CEU][hapmap];0.92[TSI][hapmap]
rs4453910	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs62302754	0.81[EUR][1000 genomes]
rs62302755	0.81[EUR][1000 genomes]
rs62302756	0.81[EUR][1000 genomes]
rs62303490	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62303494	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs62303509	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878998	chr4:46565663-46823634	Enhancers ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv878999	chr4:46565663-46860626	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv461356	chr4:46635167-46846042	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv594117	chr4:46635167-46846042	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv879000	chr4:46635167-46890046	Enhancers ZNF genes & repeats Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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