Variant report

Variant	rs11737191
Chromosome Location	chr4:85835602-85835603
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:85834967..85837152-chr4:85837989..85839589,2	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10516733	0.88[ASN][1000 genomes]
rs10516734	0.85[ASN][1000 genomes]
rs11947757	0.88[ASN][1000 genomes]
rs4544703	0.94[ASN][1000 genomes]
rs7692204	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
5	nsv508295	chr4:85822802-85885027	Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11737191	C4orf12	cis	brain	BrainEAC

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
2	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
3	chr4:85798800-85873200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr4:85799600-85841600	Weak transcription	HMEC	breast
5	chr4:85801400-85843800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:85809000-85872800	Weak transcription	A549	lung
7	chr4:85811800-85851200	Weak transcription	Esophagus	oesophagus
8	chr4:85812800-85843600	Weak transcription	HepG2	liver
9	chr4:85813000-85858800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr4:85814400-85836000	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr4:85814400-85837000	Weak transcription	Fetal Kidney	kidney
12	chr4:85814600-85835800	Weak transcription	Colon Smooth Muscle	Colon
13	chr4:85814600-85836000	Weak transcription	Brain Substantia Nigra	brain
14	chr4:85814600-85836400	Weak transcription	Duodenum Smooth Muscle	Duodenum
15	chr4:85816000-85837400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:85816000-85852400	Weak transcription	Left Ventricle	heart
17	chr4:85816800-85841600	Weak transcription	NH-A	brain
18	chr4:85819400-85836800	Weak transcription	Primary hematopoietic stem cells	blood
19	chr4:85821600-85858400	Weak transcription	Pancreas	Pancrea
20	chr4:85822600-85835800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr4:85822600-85839800	Weak transcription	Fetal Brain Male	brain
22	chr4:85822600-85844800	Weak transcription	Placenta	Placenta
23	chr4:85823400-85835800	Weak transcription	Brain Hippocampus Middle	brain
24	chr4:85824200-85836600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr4:85825400-85840200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr4:85825400-85841600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr4:85825400-85848600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr4:85825400-85848600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr4:85825600-85848800	Weak transcription	Fetal Muscle Trunk	muscle
30	chr4:85825600-85849000	Weak transcription	Fetal Intestine Large	intestine
31	chr4:85825600-85849000	Weak transcription	Fetal Muscle Leg	muscle
32	chr4:85826200-85845400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
33	chr4:85826400-85849200	Weak transcription	Fetal Stomach	stomach
34	chr4:85827200-85837200	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr4:85827200-85848800	Weak transcription	Ovary	ovary
36	chr4:85828800-85836000	Weak transcription	HUVEC	blood vessel
37	chr4:85829200-85836200	Weak transcription	Adipose Nuclei	Adipose
38	chr4:85829200-85837400	Weak transcription	Right Ventricle	heart
39	chr4:85829200-85850000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
40	chr4:85829200-85866200	Weak transcription	Spleen	Spleen
41	chr4:85829400-85836000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
42	chr4:85829400-85836800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
43	chr4:85830000-85836800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
44	chr4:85830200-85836800	Weak transcription	Pancreatic Islets	Pancreatic Islet
45	chr4:85831200-85836200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
46	chr4:85831400-85836400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
47	chr4:85831800-85836200	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
48	chr4:85832400-85836000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr4:85832600-85837600	Weak transcription	Right Atrium	heart
50	chr4:85833200-85835800	Weak transcription	Brain Anterior Caudate	brain

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