Variant report

Variant	nsv879515
Chromosome Location	chr4:85789940-85843244
allele	n/a
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:427)
CpG islands
(count:366)
Chromatin interactive
region (count:16)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:427 , 50 per page) page: 1 2 3 4 5 6 7 ... 9

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ATF1	chr4:85797167-85797486	K562	blood:	n/a	n/a
2	ATF1	chr4:85809074-85809276	K562	blood:	n/a	n/a
3	ATF2	chr4:85791448-85792026	H1-hESC	embryonic stem cell:	n/a	n/a
4	ATF2	chr4:85791502-85792002	H1-hESC	embryonic stem cell:	n/a	n/a
5	BCL11A	chr4:85791596-85791893	H1-hESC	embryonic stem cell:	n/a	n/a
6	BCL11A	chr4:85791631-85791858	H1-hESC	embryonic stem cell:	n/a	n/a
7	BCL3	chr4:85835876-85836146	GM12878	blood:	n/a	n/a
8	BHLHE40	chr4:85797131-85797463	K562	blood:	n/a	n/a
9	CCNT2	chr4:85791690-85791902	K562	blood:	n/a	n/a
10	CCNT2	chr4:85809103-85809303	K562	blood:	n/a	n/a
11	CCNT2	chr4:85796890-85797090	K562	blood:	n/a	n/a
12	CEBPB	chr4:85841784-85842055	HepG2	liver:	n/a	n/a
13	CEBPB	chr4:85802182-85802421	HepG2	liver:	n/a	chr4:85802313-85802324
14	CEBPB	chr4:85797235-85797440	A549	lung:	n/a	n/a
15	CEBPB	chr4:85843139-85843462	IMR90	lung:	n/a	chr4:85843330-85843341 chr4:85843332-85843341 chr4:85843332-85843343
16	CEBPB	chr4:85843166-85843464	HepG2	liver:	n/a	chr4:85843330-85843341 chr4:85843332-85843341 chr4:85843332-85843343
17	CEBPB	chr4:85791502-85791905	H1-hESC	embryonic stem cell:	n/a	n/a
18	CEBPB	chr4:85797259-85797413	HepG2	liver:	n/a	n/a
19	CEBPB	chr4:85797161-85797474	K562	blood:	n/a	n/a
20	CEBPB	chr4:85841703-85842451	IMR90	lung:	n/a	chr4:85842377-85842390
21	CEBPB	chr4:85840011-85840211	HepG2	liver:	n/a	n/a
22	CEBPB	chr4:85791588-85791870	IMR90	lung:	n/a	n/a
23	CEBPB	chr4:85841605-85842177	HCT-116	colon:	n/a	n/a
24	CEBPB	chr4:85841802-85842073	A549	lung:	n/a	n/a
25	CEBPB	chr4:85791523-85791990	Hela-S3	cervix:	n/a	n/a
26	CEBPB	chr4:85843181-85843409	K562	blood:	n/a	chr4:85843330-85843341 chr4:85843332-85843341 chr4:85843332-85843343
27	CEBPB	chr4:85795812-85796115	HepG2	liver:	n/a	chr4:85795966-85795977
28	CEBPB	chr4:85841725-85842099	Hela-S3	cervix:	n/a	n/a
29	CEBPB	chr4:85841681-85842232	HCT-116	colon:	n/a	n/a
30	CEBPB	chr4:85834461-85834672	HepG2	liver:	n/a	n/a
31	CEBPD	chr4:85796821-85797119	K562	blood:	n/a	n/a
32	CEBPD	chr4:85796853-85797161	K562	blood:	n/a	n/a
33	CHD2	chr4:85791508-85791975	Hela-S3	cervix:	n/a	n/a
34	CHD2	chr4:85791491-85792054	H1-hESC	embryonic stem cell:	n/a	n/a
35	CREB1	chr4:85797198-85797474	K562	blood:	n/a	n/a
36	CTCF	chr4:85811580-85811730	HCFaa	heart:	n/a	chr4:85811620-85811628
37	CTCF	chr4:85822560-85822710	HepG2	liver:	n/a	n/a
38	CTCF	chr4:85791520-85791670	HAc	cerebellar:	n/a	n/a
39	CTCF	chr4:85811640-85811790	BE2_C	brain:	n/a	n/a
40	CTCF	chr4:85822500-85822650	HUVEC	blood vessel:	n/a	n/a
41	CTCF	chr4:85811620-85811770	MCF-7	breast:	n/a	chr4:85811620-85811628
42	CTCF	chr4:85811560-85811710	AG09309	skin:	n/a	chr4:85811620-85811628
43	CTCF	chr4:85811640-85811790	K562	blood:	n/a	n/a
44	CTCF	chr4:85791560-85791710	HBMEC	blood vessel:	n/a	n/a
45	CTCF	chr4:85822500-85822650	HPAF	blood vessel:	n/a	n/a
46	CTCF	chr4:85811600-85811750	HCPEpiC	choroid plexus:	n/a	chr4:85811620-85811628
47	CTCF	chr4:85811560-85811710	HMEC	breast:	n/a	chr4:85811620-85811628
48	CTCF	chr4:85811600-85811750	HRPEpiC	eye:	n/a	chr4:85811620-85811628
49	CTCF	chr4:85822480-85822630	HUVEC	blood vessel:	n/a	n/a
50	CTCF	chr4:85822560-85822710	BE2_C	brain:	n/a	n/a

(count:366 , 50 per page) page: 1 2 3 4 5 6 7 8

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr4:85791643-85791693	MCF-7	breast:	n/a
2	chr4:85818877-85818927	BJ	skin:	n/a
3	chr4:85801119-85801169	AG04449	skin:	fetal
4	chr4:85818499-85818549	T-47D	breast:	n/a
5	chr4:85818121-85818171	NB4	blood:	n/a
6	chr4:85801119-85801169	SK-N-MC	brain:	n/a
7	chr4:85818121-85818171	HMEC	breast:	n/a
8	chr4:85818121-85818171	AG09309	skin:	n/a
9	chr4:85828823-85828873	Hepatocyte	liver:	n/a
10	chr4:85791643-85791693	AG04449	skin:	fetal
11	chr4:85818499-85818549	PrEC	prostate:	n/a
12	chr4:85818877-85818927	HAEpiC	amniotic membrane:	n/a
13	chr4:85791643-85791693	HRPEpiC	eye:	n/a
14	chr4:85818877-85818927	MCF-7	breast:	n/a
15	chr4:85818121-85818171	T-47D	breast:	n/a
16	chr4:85818499-85818549	Jurkat	blood:	n/a
17	chr4:85818499-85818549	AoSMC	blood vessel:	n/a
18	chr4:85818877-85818927	H1-hESC	embryonic stem cell:	embryo
19	chr4:85801119-85801169	GM12878	blood:	n/a
20	chr4:85818121-85818171	PFSK-1	brain:	n/a
21	chr4:85818121-85818171	ovcar-3	ovarian:	n/a
22	chr4:85791643-85791693	AoSMC	blood vessel:	n/a
23	chr4:85828823-85828873	MCF10A-Er-Src	breast:	n/a
24	chr4:85828823-85828873	ECC-1	luminal epithelium:	n/a
25	chr4:85818877-85818927	NHDF-neo	bronchial:	n/a
26	chr4:85818499-85818549	AG10803	skin:	n/a
27	chr4:85791643-85791693	HPAEpiC	pulmonary alveolar:	n/a
28	chr4:85828823-85828873	GM06990	blood:	n/a
29	chr4:85791643-85791693	HNPCEpiC	eye:	n/a
30	chr4:85818499-85818549	Caco-2	colon:	n/a
31	chr4:85818499-85818549	BE2_C	brain:	n/a
32	chr4:85828823-85828873	NT2-D1	testis:	n/a
33	chr4:85818499-85818549	Hepatocyte	liver:	n/a
34	chr4:85801119-85801169	HL-60	blood:	n/a
35	chr4:85828823-85828873	BJ	skin:	n/a
36	chr4:85818877-85818927	Hepatocyte	liver:	n/a
37	chr4:85818877-85818927	T-47D	breast:	n/a
38	chr4:85818499-85818549	A549	lung:	n/a
39	chr4:85828823-85828873	HEEpiC	esophagus:	n/a
40	chr4:85818499-85818549	Hela-S3	cervix:	n/a
41	chr4:85818877-85818927	RPTEC	kidney:	n/a
42	chr4:85801119-85801169	LNCaP	prostate:	n/a
43	chr4:85791643-85791693	BJ	skin:	n/a
44	chr4:85818499-85818549	RPTEC	kidney:	n/a
45	chr4:85818499-85818549	HRCEpiC	kidney:	n/a
46	chr4:85828823-85828873	GM19239	blood:	n/a
47	chr4:85801119-85801169	MCF10A-Er-Src	breast:	n/a
48	chr4:85791643-85791693	HCF	heart:	n/a
49	chr4:85828823-85828873	HUVEC	blood vessel:	n/a
50	chr4:85801119-85801169	SK-N-SH_RA	brain:	n/a

(count:16 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:
2	chr4:85834967..85837152-chr4:85837989..85839589,2	MCF-7	breast:
3	chr4:85826077..85827667-chr4:85831110..85833751,2	MCF-7	breast:
4	chr4:85826077..85827667-chr4:85831110..85833751,2	MCF-7	breast:
5	chr4:85824461..85826915-chr4:85836524..85838821,2	MCF-7	breast:
6	chr4:85834967..85837152-chr4:85837989..85839589,2	MCF-7	breast:
7	chr4:85808355..85810706-chr4:85887236..85889159,2	MCF-7	breast:
8	chr4:85790704..85793201-chr4:85794396..85796938,2	MCF-7	breast:
9	chr4:85820113..85822349-chr4:85884941..85887197,2	MCF-7	breast:
10	chr4:85778715..85781852-chr4:85789368..85792653,3	MCF-7	breast:
11	chr4:85790704..85793201-chr4:85794396..85796938,2	MCF-7	breast:
12	chr4:85805922..85807469-chr4:85886276..85888446,2	MCF-7	breast:
13	chr4:85824461..85826915-chr4:85836524..85838821,2	MCF-7	breast:
14	chr4:85840711..85842530-chr4:85882246..85885030,2	MCF-7	breast:
15	chr4:85802831..85804708-chr4:85806036..85808282,2	K562	blood:
16	chr4:85815282..85817740-chr4:85886020..85888115,2	K562	blood:

No data

Variant related genes	Relation type
WDFY3	TF binding region
RNU6-469P	TF binding region
WDFY3	CpG island
RNU6-469P	CpG island
ENSG00000252062	chromatin interactions
ENSG00000180769	chromatin interactions
ENSG00000163625	chromatin interactions

Extended variants
information (count: 1791 )
Associated
traits (count: 76 )

Variant overlapped rSNPs/rCNVs (count:1791 , 50 per page) page: 1 2 3 4 5 6 7 ... 36

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	rs17369165	chr4:85789940-85789941	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	LD-proxies of rSNP Overlapped rCNV	mRNA abundance
2	rs192652457	chr4:85789975-85789976	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
3	rs565791063	chr4:85789976-85789977	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
4	rs183847098	chr4:85789987-85789988	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
5	rs555112353	chr4:85789990-85789991	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
6	rs139538999	chr4:85790015-85790016	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
7	rs115142967	chr4:85790073-85790074	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
8	rs373148909	chr4:85790089-85790090	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
9	rs72947579	chr4:85790196-85790197	Flanking Active TSS Weak transcription Enhancers Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
10	rs188765086	chr4:85790208-85790209	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
11	rs544946721	chr4:85790209-85790210	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
12	rs559895062	chr4:85790261-85790262	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
13	rs142636086	chr4:85790275-85790276	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
14	rs542759652	chr4:85790277-85790278	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
15	rs184773012	chr4:85790289-85790290	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
16	rs150975476	chr4:85790321-85790322	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
17	rs79957484	chr4:85790345-85790346	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
18	rs550148953	chr4:85790363-85790364	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
19	rs534321157	chr4:85790379-85790380	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
20	rs565534702	chr4:85790419-85790420	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
21	rs532699335	chr4:85790420-85790421	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
22	rs192868488	chr4:85790446-85790447	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
23	rs547744756	chr4:85790477-85790478	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
24	rs184937199	chr4:85790495-85790496	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
25	rs34300624	chr4:85790499-85790500	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
26	rs111308298	chr4:85790503-85790504	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
27	rs539245313	chr4:85790516-85790517	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
28	rs548257607	chr4:85790517-85790518	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
29	rs139640825	chr4:85790540-85790541	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
30	rs188426106	chr4:85790596-85790597	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
31	rs556281978	chr4:85790635-85790636	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
32	rs556092622	chr4:85790661-85790662	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
33	rs531267548	chr4:85790721-85790722	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
34	rs149733467	chr4:85790741-85790742	Active TSS Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
35	rs538577254	chr4:85790816-85790817	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
36	rs146549999	chr4:85790863-85790864	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
37	rs35875415	chr4:85790913-85790914	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
38	rs115170285	chr4:85790926-85790927	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
39	rs541691620	chr4:85790944-85790945	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
40	rs114009697	chr4:85791033-85791034	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
41	rs141259904	chr4:85791059-85791060	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
42	rs539941806	chr4:85791184-85791185	Active TSS Weak transcription Flanking Active TSS Enhancers	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
43	rs543951107	chr4:85791259-85791260	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
44	rs565361487	chr4:85791263-85791264	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
45	rs532807409	chr4:85791292-85791293	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
46	rs144964416	chr4:85791304-85791305	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
47	rs559650724	chr4:85791313-85791314	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
48	rs191303916	chr4:85791380-85791381	Flanking Active TSS Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
49	rs76514967	chr4:85791460-85791461	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a
50	rs183494360	chr4:85791486-85791487	Flanking Active TSS Active TSS Enhancers Weak transcription Strong transcription	Chromatin interactive region	1 gene(s)	Overlapped CNVs	n/a

Variant related diseases (count:76)

Disease	PMID	Source
Acute lymphoblastic leukemia	22237106	CNVD
Glioblastoma multiforme	21080181	CNVD
Esophageal squamous carcinoma	21637470	CNVD
Chordoma	21602918	CNVD
HIV/AIDS	22032296	CNVD
Medulloblastoma	21979893	CNVD
Neuroblastoma	18923191	CNVD
Thoracic aortic aneurysm	21092924	CNVD
Intellectual disability	22102821	CNVD
Autism	22495311	CNVD
Breast cancer	21858162	CNVD
Small bowel adenocarcinoma	21586687	CNVD
Gastric cancer	21586687	CNVD
lymphocytic leukemia	21291569	CNVD
Basal cell lymphoma	16317097	CNVD
Diffuse large b-cell lymphoma	16317097	CNVD
Melanoma	18172304	CNVD
Acute lymphoblastic leukemia	20067559	CNVD
Breast cancer	17603634	CNVD
Parkinson disease	21956041	CNVD
Mental retardation	20522426	CNVD
delayed speech	20522426	CNVD
growth disorder	20522426	CNVD
Hepatocellular carcinoma	16750200	CNVD
Myxofibrosarcoma	16751306	CNVD
Esophageal squamous carcinoma	18350619	CNVD
Parkinson disease	18923514	CNVD
Non-syndromic sensorineural hearing loss	15273396	CNVD
Cancer	21183584	CNVD
Breast cancer	16272173	CNVD
Colorectal cancer	19359472	CNVD
Malignant mesothelioma	18160781	CNVD
Medulloblastoma	18056178	CNVD
Multiple myeloma	17077331	CNVD
Pleural malignant mesothelioma	18160781	CNVD
Primary mediastinal b-cell lymphoma	17728785	CNVD
Oral squamous cell carcinoma	17134496	CNVD
4q-syndrome	17576883	CNVD
Cancer	21637783	CNVD
Non-syndromic sensorineural hearing loss	18471307	CNVD
Colorectal cancer	20709793	CNVD
Muscular dystrophy	21149563	CNVD
Endometrial cancer	22040021	CNVD
Breast cancer	21264507	CNVD
Glioblastoma multiforme	19960244	CNVD
Glioblastoma multiforme	17387387	CNVD
Hepatocellular carcinoma	22174799	CNVD
Liposarcoma	21253554	CNVD
Oligodendroglial tumors	17285580	CNVD
Cervical cancer	21062161	CNVD
Metanephric adenoma	20802469	CNVD
Breast cancer	16608533	CNVD
Adenoid cystic carcinoma	18698036	CNVD
Lung cancer	19208797	CNVD
Wilms tumour	21544195	CNVD
Breast cancer	21785460	CNVD
Basal cell lymphoma	17170743	CNVD
Follicular lymphoma	17170743	CNVD
Chronic lymphocytic leukemia	20421269	CNVD
Myelodysplastic syndrome	21251322	CNVD
Multiple myeloma	17550852	CNVD
Lung cancer	18438408	CNVD
Chronic lymphocytic leukemia	18922857	CNVD
Cancer	22429812	CNVD
Acute lymphoblastic leukemia	20435627	CNVD
T-cell prolymphocytic leukemia	19278963	CNVD
Autism	18414403	CNVD
Chronic lymphocytic leukemia	21670202	CNVD
primary effusion lymphomas	17116491	CNVD
Prostate cancer	16573809	CNVD
Olfactory neuroblastoma	18408657	CNVD
small cell lung cancer	20016488	CNVD
Splenic marginal zone lymphoma	21957467	CNVD
Breast cancer	17133270	CNVD
Myelofibrosis	22110671	CNVD
Breast cancer	22522925	CNVD

Chromatin state (count:1126 , 50 per page) page: 1 2 3 4 5 6 7 ... 23

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
2	chr4:85731400-85791600	Weak transcription	Lung	lung
3	chr4:85736400-85790600	Weak transcription	NHEK	skin
4	chr4:85770000-85792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr4:85771000-85791400	Weak transcription	HMEC	breast
6	chr4:85771000-85791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr4:85771200-85791200	Weak transcription	A549	lung
8	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
9	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
10	chr4:85771600-85791600	Weak transcription	HepG2	liver
11	chr4:85773600-85791400	Weak transcription	NH-A	brain
12	chr4:85776000-85794200	Weak transcription	Fetal Lung	lung
13	chr4:85776200-85791400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:85776200-85791400	Weak transcription	Fetal Muscle Leg	muscle
15	chr4:85778000-85791200	Weak transcription	Osteobl	bone
16	chr4:85778000-85791400	Weak transcription	H9 Cell Line	embryonic stem cell
17	chr4:85778000-85791400	Weak transcription	Aorta	Aorta
18	chr4:85778000-85792200	Weak transcription	Colon Smooth Muscle	Colon
19	chr4:85778000-85800000	Weak transcription	Brain Cingulate Gyrus	brain
20	chr4:85778000-85813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
22	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
23	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
24	chr4:85780200-85791400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
25	chr4:85781200-85795000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
26	chr4:85781400-85791200	Weak transcription	NHLF	lung
27	chr4:85781800-85790200	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr4:85781800-85790400	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr4:85781800-85791200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
30	chr4:85781800-85791400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
31	chr4:85781800-85791400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr4:85781800-85791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr4:85781800-85791400	Weak transcription	Muscle Satellite Cultured Cells	--
34	chr4:85781800-85791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:85781800-85791400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
36	chr4:85781800-85791400	Weak transcription	Placenta	Placenta
37	chr4:85781800-85791400	Weak transcription	HSMMtube	muscle
38	chr4:85781800-85791400	Weak transcription	NHDF-Ad	bronchial
39	chr4:85781800-85791600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr4:85781800-85794600	Weak transcription	Rectal Mucosa Donor 31	rectum
41	chr4:85781800-85798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
42	chr4:85781800-85798200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
43	chr4:85781800-85800200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr4:85781800-85802400	Weak transcription	Fetal Intestine Large	intestine
45	chr4:85781800-85808200	Weak transcription	Adipose Nuclei	Adipose
46	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
47	chr4:85782000-85791200	Weak transcription	HSMM	muscle
48	chr4:85782000-85798600	Weak transcription	Liver	Liver
49	chr4:85782200-85791200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
50	chr4:85782200-85791400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links