Variant report

Variant	rs183494360
Chromosome Location	chr4:85791486-85791487
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85778715..85781852-chr4:85789368..85792653,3	MCF-7	breast:
2	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:
3	chr4:85790704..85793201-chr4:85794396..85796938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163625	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
2	chr4:85731400-85791600	Weak transcription	Lung	lung
3	chr4:85770000-85792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85771000-85791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
6	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
7	chr4:85771600-85791600	Weak transcription	HepG2	liver
8	chr4:85776000-85794200	Weak transcription	Fetal Lung	lung
9	chr4:85778000-85792200	Weak transcription	Colon Smooth Muscle	Colon
10	chr4:85778000-85800000	Weak transcription	Brain Cingulate Gyrus	brain
11	chr4:85778000-85813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
13	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
15	chr4:85781200-85795000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr4:85781800-85791600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr4:85781800-85794600	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr4:85781800-85798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr4:85781800-85798200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr4:85781800-85800200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr4:85781800-85802400	Weak transcription	Fetal Intestine Large	intestine
22	chr4:85781800-85808200	Weak transcription	Adipose Nuclei	Adipose
23	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:85782000-85798600	Weak transcription	Liver	Liver
25	chr4:85782200-85792800	Weak transcription	Fetal Stomach	stomach
26	chr4:85782200-85796400	Weak transcription	Monocytes-CD14+_RO01746	blood
27	chr4:85782200-85810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr4:85782200-85814800	Weak transcription	Fetal Intestine Small	intestine
29	chr4:85783200-85798800	Weak transcription	Brain Angular Gyrus	brain
30	chr4:85783400-85814200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
31	chr4:85783600-85798800	Weak transcription	Brain Inferior Temporal Lobe	brain
32	chr4:85783600-85826600	Weak transcription	Ovary	ovary
33	chr4:85788000-85791600	Weak transcription	Gastric	stomach
34	chr4:85788000-85798200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
35	chr4:85789400-85792400	Flanking Active TSS	HUVEC	blood vessel
36	chr4:85789600-85791800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr4:85789800-85792400	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
38	chr4:85790400-85791800	Weak transcription	Fetal Heart	heart
39	chr4:85790400-85793200	Enhancers	Primary neutrophils fromperipheralblood	blood
40	chr4:85790600-85800000	Weak transcription	Primary monocytes fromperipheralblood	blood
41	chr4:85790800-85791600	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr4:85790800-85791800	Flanking Active TSS	HUES48 Cell Line	embryonic stem cell
43	chr4:85791000-85791600	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
44	chr4:85791000-85792200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
45	chr4:85791000-85792200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
46	chr4:85791000-85792200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
47	chr4:85791200-85791600	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
48	chr4:85791200-85791600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
49	chr4:85791200-85791600	Enhancers	A549	lung
50	chr4:85791200-85792400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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