Variant report

Variant	rs559650724
Chromosome Location	chr4:85791313-85791314
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:85778715..85781852-chr4:85789368..85792653,3	MCF-7	breast:
2	chr4:85790487..85793474-chr4:85885792..85887497,2	MCF-7	breast:
3	chr4:85790704..85793201-chr4:85794396..85796938,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000163625	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1829655	chr4:85577491-86292692	Strong transcription Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
2	nsv427684	chr4:85668487-85863446	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers ZNF genes & repeats Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv519588	chr4:85762385-86591202	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
4	nsv879515	chr4:85789940-85843244	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:85723000-85821000	Weak transcription	Pancreas	Pancrea
2	chr4:85731400-85791600	Weak transcription	Lung	lung
3	chr4:85770000-85792800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr4:85771000-85791400	Weak transcription	HMEC	breast
5	chr4:85771000-85791600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr4:85771200-85798200	Weak transcription	Left Ventricle	heart
7	chr4:85771200-85803200	Weak transcription	Brain Germinal Matrix	brain
8	chr4:85771600-85791600	Weak transcription	HepG2	liver
9	chr4:85773600-85791400	Weak transcription	NH-A	brain
10	chr4:85776000-85794200	Weak transcription	Fetal Lung	lung
11	chr4:85776200-85791400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr4:85776200-85791400	Weak transcription	Fetal Muscle Leg	muscle
13	chr4:85778000-85791400	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr4:85778000-85791400	Weak transcription	Aorta	Aorta
15	chr4:85778000-85792200	Weak transcription	Colon Smooth Muscle	Colon
16	chr4:85778000-85800000	Weak transcription	Brain Cingulate Gyrus	brain
17	chr4:85778000-85813800	Weak transcription	Duodenum Smooth Muscle	Duodenum
18	chr4:85778000-85836600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr4:85778800-85832800	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr4:85779800-85828800	Weak transcription	Spleen	Spleen
21	chr4:85780200-85791400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr4:85781200-85795000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr4:85781800-85791400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr4:85781800-85791400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr4:85781800-85791400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr4:85781800-85791400	Weak transcription	Muscle Satellite Cultured Cells	--
27	chr4:85781800-85791400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr4:85781800-85791400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr4:85781800-85791400	Weak transcription	Placenta	Placenta
30	chr4:85781800-85791400	Weak transcription	HSMMtube	muscle
31	chr4:85781800-85791400	Weak transcription	NHDF-Ad	bronchial
32	chr4:85781800-85791600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr4:85781800-85794600	Weak transcription	Rectal Mucosa Donor 31	rectum
34	chr4:85781800-85798200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
35	chr4:85781800-85798200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr4:85781800-85800200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr4:85781800-85802400	Weak transcription	Fetal Intestine Large	intestine
38	chr4:85781800-85808200	Weak transcription	Adipose Nuclei	Adipose
39	chr4:85781800-85848600	Weak transcription	Stomach Smooth Muscle	stomach
40	chr4:85782000-85798600	Weak transcription	Liver	Liver
41	chr4:85782200-85791400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr4:85782200-85791400	Weak transcription	Fetal Muscle Trunk	muscle
43	chr4:85782200-85792800	Weak transcription	Fetal Stomach	stomach
44	chr4:85782200-85796400	Weak transcription	Monocytes-CD14+_RO01746	blood
45	chr4:85782200-85810800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
46	chr4:85782200-85814800	Weak transcription	Fetal Intestine Small	intestine
47	chr4:85782400-85791400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr4:85783200-85798800	Weak transcription	Brain Angular Gyrus	brain
49	chr4:85783400-85814200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
50	chr4:85783600-85798800	Weak transcription	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links