Variant report

Variant	rs11738445
Chromosome Location	chr5:98212571-98212572
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:98211290..98212809-chr5:98231346..98233416,2	K562	blood:
2	chr5:98211232..98213424-chr5:98216895..98219152,2	K562	blood:
3	chr5:98203164..98205297-chr5:98210621..98212609,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000153922	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1126253	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11739315	0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs60421587	0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62367700	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7702352	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7721369	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7725230	0.84[EUR][1000 genomes]
rs9790858	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98180200-98213600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr5:98186200-98213400	Weak transcription	Esophagus	oesophagus
3	chr5:98188400-98247000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr5:98189400-98227400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr5:98189600-98213800	Weak transcription	HSMMtube	muscle
6	chr5:98189600-98215400	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr5:98189600-98241000	Strong transcription	HUES48 Cell Line	embryonic stem cell
8	chr5:98189800-98241000	Strong transcription	Monocytes-CD14+_RO01746	blood
9	chr5:98189800-98241400	Strong transcription	HUES64 Cell Line	embryonic stem cell
10	chr5:98189800-98241400	Strong transcription	iPS-20b Cell Line	embryonic stem cell
11	chr5:98189800-98241800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr5:98190000-98240600	Strong transcription	Primary neutrophils fromperipheralblood	blood
13	chr5:98190000-98240800	Strong transcription	Primary B cells from peripheral blood	blood
14	chr5:98190000-98240800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr5:98190200-98240600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr5:98190200-98240600	Strong transcription	Liver	Liver
17	chr5:98190200-98241000	Strong transcription	Primary monocytes fromperipheralblood	blood
18	chr5:98190400-98213200	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr5:98190400-98214600	Weak transcription	Aorta	Aorta
20	chr5:98190400-98224200	Strong transcription	Placenta	Placenta
21	chr5:98190400-98234600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr5:98190400-98238200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr5:98190400-98238800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
24	chr5:98190400-98240000	Weak transcription	Stomach Mucosa	stomach
25	chr5:98190400-98240400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr5:98190400-98240600	Strong transcription	Primary T cells fromperipheralblood	blood
27	chr5:98190400-98240800	Strong transcription	Rectal Mucosa Donor 29	rectum
28	chr5:98190400-98241200	Strong transcription	Fetal Thymus	thymus
29	chr5:98190400-98243800	Strong transcription	Dnd41	blood
30	chr5:98190600-98240600	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
31	chr5:98190600-98240800	Strong transcription	Primary T helper cells fromperipheralblood	blood
32	chr5:98190600-98240800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr5:98190600-98241000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr5:98190800-98216200	Strong transcription	Primary T helper cells PMA-I stimulated	--
35	chr5:98190800-98226000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
36	chr5:98190800-98240000	Strong transcription	Duodenum Mucosa	Duodenum
37	chr5:98191000-98225600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
38	chr5:98191000-98240800	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr5:98191400-98213600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr5:98192200-98214600	Weak transcription	Brain Angular Gyrus	brain
41	chr5:98193600-98219000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
42	chr5:98195200-98240800	Strong transcription	Primary B cells from cord blood	blood
43	chr5:98196000-98226800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
44	chr5:98196200-98234000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
45	chr5:98198000-98218600	Strong transcription	Breast Myoepithelial Primary Cells	Breast
46	chr5:98198000-98219000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr5:98198000-98219200	Strong transcription	Hela-S3	cervix
48	chr5:98198400-98240800	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr5:98198800-98224000	Weak transcription	Pancreatic Islets	Pancreatic Islet
50	chr5:98199800-98215200	Strong transcription	HMEC	breast

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