Variant report

Variant	rs7725230
Chromosome Location	chr5:98293530-98293531
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1126253	0.90[EUR][1000 genomes]
rs11738445	0.84[EUR][1000 genomes]
rs11739315	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11739912	0.81[ASN][1000 genomes]
rs60421587	0.86[EUR][1000 genomes]
rs61471055	0.87[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs62367700	0.90[EUR][1000 genomes]
rs62367705	0.91[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7702352	0.86[EUR][1000 genomes]
rs7721369	0.87[EUR][1000 genomes]
rs9790858	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv882416	chr5:98146106-98312447	Bivalent/Poised TSS Strong transcription Genic enhancers Weak transcription Enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	35 gene(s)	inside rSNPs	diseases
3	nsv537819	chr5:98253348-98299646	Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	32 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98274800-98297200	Weak transcription	Thymus	Thymus
2	chr5:98278600-98299400	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr5:98279400-98298400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:98283800-98293800	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr5:98290600-98296800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr5:98292800-98294200	Enhancers	Colonic Mucosa	Colon
7	chr5:98292800-98295000	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr5:98293000-98294400	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr5:98293400-98294800	Weak transcription	K562	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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