Variant report

Variant	rs11739536
Chromosome Location	chr5:107283954-107283955
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1025493	0.80[ASW][hapmap];1.00[CEU][hapmap];0.91[TSI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1025494	1.00[CEU][hapmap];0.84[YRI][hapmap];0.85[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12054721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12651919	0.86[JPT][hapmap]
rs12656140	0.93[JPT][hapmap]
rs12657654	0.92[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12659389	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12659811	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1433057	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17437658	0.93[JPT][hapmap]
rs17437979	0.93[JPT][hapmap]
rs17438307	0.93[JPT][hapmap]
rs17439150	0.93[JPT][hapmap]
rs2067765	1.00[JPT][hapmap]
rs4582260	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11739536	TMEM232	cis	parietal	SCAN

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107265800-107284200	Weak transcription	Primary T cells from cord blood	blood
3	chr5:107273400-107284200	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr5:107273600-107287800	Weak transcription	Gastric	stomach
5	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
6	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr5:107274400-107284000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
9	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr5:107275200-107286600	Weak transcription	Lung	lung
11	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
12	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
13	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus
14	chr5:107279200-107284200	Weak transcription	Dnd41	blood
15	chr5:107279800-107284000	Weak transcription	Sigmoid Colon	Sigmoid Colon
16	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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