Variant report

Variant	rs1433057
Chromosome Location	chr5:107285076-107285077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1025493	0.93[ASW][hapmap];1.00[CEU][hapmap];0.86[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs1025494	1.00[CEU][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11739536	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12054721	1.00[CEU][hapmap];1.00[CHB][hapmap];0.97[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.91[TSI][hapmap];0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12651919	0.86[JPT][hapmap]
rs12656140	0.93[JPT][hapmap]
rs12657654	0.92[CEU][hapmap];0.81[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12659389	0.82[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs12659811	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs17437658	0.93[JPT][hapmap]
rs17437979	0.93[JPT][hapmap]
rs17438307	0.93[JPT][hapmap]
rs17439150	0.93[JPT][hapmap]
rs2067765	1.00[JPT][hapmap]
rs4582260	0.85[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882682	chr5:107213361-107458336	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107261400-107286600	Weak transcription	Aorta	Aorta
2	chr5:107273600-107287800	Weak transcription	Gastric	stomach
3	chr5:107273800-107286600	Weak transcription	Right Atrium	heart
4	chr5:107274000-107286600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr5:107274600-107290000	Weak transcription	Fetal Brain Female	brain
6	chr5:107275200-107286600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr5:107275200-107286600	Weak transcription	Lung	lung
8	chr5:107277800-107285200	Weak transcription	Thymus	Thymus
9	chr5:107278000-107287200	Weak transcription	Pancreas	Pancrea
10	chr5:107278800-107285200	Weak transcription	Fetal Thymus	thymus
11	chr5:107283200-107294400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr5:107284200-107285200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr5:107284200-107285200	Enhancers	Dnd41	blood
14	chr5:107284200-107285400	Enhancers	Primary T cells from cord blood	blood
15	chr5:107284400-107285200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:107284400-107286600	Weak transcription	Psoas Muscle	Psoas
17	chr5:107284400-107289200	Weak transcription	Cortex derived primary cultured neurospheres	brain
18	chr5:107284400-107290000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr5:107284400-107292600	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr5:107284600-107285400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
21	chr5:107284600-107285600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
22	chr5:107284600-107286600	Weak transcription	Left Ventricle	heart
23	chr5:107284600-107286800	Weak transcription	Pancreatic Islets	Pancreatic Islet
24	chr5:107285000-107286800	Enhancers	Primary T helper cells fromperipheralblood	blood

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