Variant report

Variant	rs11739984
Chromosome Location	chr5:40895578-40895579
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:40887409..40889987-chr5:40893974..40896767,2	MCF-7	breast:
2	chr5:40832872..40835658-chr5:40893806..40896562,2	MCF-7	breast:
3	chr5:40832193..40835504-chr5:40894325..40897011,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000145592	Chromatin interaction
ENSG00000212296	Chromatin interaction

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10056097	0.80[EUR][1000 genomes]
rs1078376	1.00[ASN][1000 genomes]
rs11741864	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742894	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs12153063	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12187430	1.00[ASN][1000 genomes]
rs1376179	1.00[ASN][1000 genomes]
rs34153616	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56095030	1.00[ASN][1000 genomes]
rs60001990	1.00[ASN][1000 genomes]
rs60714178	1.00[ASN][1000 genomes]
rs62357602	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357607	0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357609	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357613	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357614	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357615	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357644	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357645	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357646	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62357647	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62358578	0.83[AFR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73088577	1.00[ASN][1000 genomes]
rs73750214	1.00[ASN][1000 genomes]
rs73750215	1.00[ASN][1000 genomes]
rs73750216	1.00[ASN][1000 genomes]
rs73750218	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv880438	chr5:40753877-40900717	Strong transcription Enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	160 gene(s)	inside rSNPs	diseases
2	nsv881467	chr5:40869802-41008650	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	esv2757114	chr5:40874078-41009282	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	esv2759341	chr5:40874078-41009282	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
5	nsv823055	chr5:40875708-41004839	Enhancers Strong transcription Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	esv35077	chr5:40875843-41000671	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:40894400-40895600	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr5:40895000-40895600	Enhancers	H9 Cell Line	embryonic stem cell
3	chr5:40895200-40895600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:40895200-40895600	Flanking Active TSS	HepG2	liver
5	chr5:40895200-40895800	Active TSS	ES-I3 Cell Line	embryonic stem cell
6	chr5:40895200-40895800	Enhancers	H1 Cell Line	embryonic stem cell
7	chr5:40895200-40895800	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
8	chr5:40895200-40895800	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:40895400-40895600	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr5:40895400-40895600	Active TSS	Liver	Liver
11	chr5:40895400-40895600	Enhancers	Pancreas	Pancrea
12	chr5:40895400-40895800	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr5:40895400-40895800	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr5:40895400-40895800	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
15	chr5:40895400-40895800	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr5:40895400-40896000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr5:40895400-40896400	Enhancers	Stomach Mucosa	stomach

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