Variant report

Variant	rs11741340
Chromosome Location	chr5:68337996-68337997
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000085231	Chromatin interaction
ENSG00000152942	Chromatin interaction
ENSG00000134057	Chromatin interaction
ENSG00000145740	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11741847	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13170024	0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1981959	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4437332	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4976065	0.81[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs5009394	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6450004	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6866288	0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7732438	0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68330600-68339000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:68332400-68338400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr5:68332400-68338800	Weak transcription	NHEK	skin
4	chr5:68333000-68338400	Weak transcription	K562	blood
5	chr5:68337200-68338800	Enhancers	Liver	Liver
6	chr5:68337400-68338400	Enhancers	HepG2	liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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