Variant report

Variant	rs1981959
Chromosome Location	chr5:68341033-68341034
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000250237	TF binding region
ENSG00000134057	Chromatin interaction
ENSG00000152942	Chromatin interaction
ENSG00000085231	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11741340	0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11741847	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13170024	0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4437332	0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4976065	0.80[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs5009394	0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6450004	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6866288	0.83[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7732438	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:68338400-68342200	Enhancers	K562	blood
2	chr5:68339200-68342200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr5:68339200-68342200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:68339200-68342200	Weak transcription	Hela-S3	cervix
5	chr5:68339400-68341600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr5:68339400-68342200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:68339400-68345600	Weak transcription	HSMMtube	muscle
8	chr5:68339600-68342200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:68339600-68342200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr5:68339800-68342200	Weak transcription	A549	lung
11	chr5:68339800-68344800	Weak transcription	HepG2	liver
12	chr5:68340000-68342200	Weak transcription	Liver	Liver
13	chr5:68340000-68345600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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