Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10075064	1.00[JPT][hapmap]
rs10941557	1.00[JPT][hapmap]
rs16871673	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs4957422	1.00[JPT][hapmap]
rs4957423	1.00[JPT][hapmap]
rs589564	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs597921	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs598318	0.80[AFR][1000 genomes]
rs634858	0.80[AFR][1000 genomes]
rs651256	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs661845	0.80[AFR][1000 genomes]
rs664228	0.80[AFR][1000 genomes]
rs664680	0.80[AFR][1000 genomes]
rs665157	0.80[AFR][1000 genomes]
rs666457	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs675146	1.00[CEU][hapmap];0.93[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs675609	1.00[CHB][hapmap]
rs677450	0.89[YRI][hapmap];0.81[AFR][1000 genomes]
rs677997	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs681400	0.80[AFR][1000 genomes]
rs6869561	0.85[YRI][hapmap];0.80[AFR][1000 genomes]
rs6885560	0.82[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs6888718	0.83[AFR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41610600-41611000	Enhancers	HepG2	liver

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