Variant report

Variant	rs666457
Chromosome Location	chr5:41575100-41575101
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs11742364	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs2172925	1.00[CHB][hapmap]
rs589564	0.83[AFR][1000 genomes]
rs597921	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs598318	0.85[AFR][1000 genomes]
rs614402	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs633407	0.80[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs634858	0.85[AFR][1000 genomes]
rs645561	1.00[CHB][hapmap]
rs651256	0.83[AFR][1000 genomes]
rs660333	1.00[CHB][hapmap]
rs661845	0.85[AFR][1000 genomes]
rs664228	0.85[AFR][1000 genomes]
rs664634	0.83[AFR][1000 genomes]
rs664680	0.85[AFR][1000 genomes]
rs665157	0.85[AFR][1000 genomes]
rs675146	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[YRI][hapmap];1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs675609	1.00[CHB][hapmap]
rs677450	1.00[CHB][hapmap];0.92[YRI][hapmap];0.86[AFR][1000 genomes]
rs677997	1.00[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs681400	0.85[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs6869561	1.00[CHB][hapmap];0.89[YRI][hapmap];0.85[AFR][1000 genomes]
rs6888718	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv881563	chr5:41560079-41616100	Weak transcription Enhancers ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv823058	chr5:41570936-41582473	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv514304	chr5:41571299-41581271	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1794449	chr5:41571309-41581513	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv2754651	chr5:41571309-41581513	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2755206	chr5:41571309-41581513	Flanking Active TSS Enhancers ZNF genes & repeats Active TSS Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv2421732	chr5:41571309-41583279	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2753438	chr5:41571309-41600812	Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv441951	chr5:41571313-41581513	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv818348	chr5:41572722-41579718	Enhancers Flanking Active TSS Weak transcription Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:41575000-41575400	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr5:41575000-41576200	Enhancers	iPS-15b Cell Line	embryonic stem cell
3	chr5:41575000-41576200	Enhancers	iPS-18 Cell Line	embryonic stem cell

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