Variant report

Variant	rs11742884
Chromosome Location	chr5:148183832-148183833
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10037979	0.82[EUR][1000 genomes]
rs10045453	0.87[EUR][1000 genomes]
rs10477394	0.86[EUR][1000 genomes]
rs1347110	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17778143	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1991795	0.93[EUR][1000 genomes]
rs2400705	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11742884	CAMK2A	cis	parietal	SCAN

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148175800-148185000	Weak transcription	Osteobl	bone
2	chr5:148178800-148188400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
3	chr5:148179000-148188400	Enhancers	Primary monocytes fromperipheralblood	blood
4	chr5:148182200-148185200	Weak transcription	Liver	Liver
5	chr5:148182400-148184000	Weak transcription	K562	blood
6	chr5:148183200-148184200	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr5:148183400-148184800	Enhancers	GM12878-XiMat	blood
8	chr5:148183400-148185000	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr5:148183400-148185000	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr5:148183600-148185400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:148183600-148185800	Enhancers	Fetal Heart	heart
12	chr5:148183600-148188400	Enhancers	Primary B cells from peripheral blood	blood
13	chr5:148183600-148188400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr5:148183800-148184000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr5:148183800-148184000	Enhancers	Right Atrium	heart
16	chr5:148183800-148185000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
17	chr5:148183800-148185200	Enhancers	Primary B cells from cord blood	blood
18	chr5:148183800-148188600	Enhancers	Primary hematopoietic stem cells	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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