Variant report

Variant	rs2400705
Chromosome Location	chr5:148191018-148191019
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:148187697..148189933-chr5:148190801..148192608,2	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10045453	0.84[EUR][1000 genomes]
rs10477394	0.84[EUR][1000 genomes]
rs11742884	0.89[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1347110	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17778143	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1991795	0.89[EUR][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:148186400-148191200	Enhancers	Fetal Heart	heart
2	chr5:148186400-148205400	Weak transcription	Aorta	Aorta
3	chr5:148186600-148195000	Weak transcription	Brain Anterior Caudate	brain
4	chr5:148187800-148191200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
5	chr5:148188600-148195000	Weak transcription	Spleen	Spleen
6	chr5:148188800-148191200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr5:148189000-148195000	Weak transcription	Esophagus	oesophagus
8	chr5:148189000-148204800	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr5:148189000-148205200	Weak transcription	Psoas Muscle	Psoas
10	chr5:148189200-148194400	Weak transcription	Brain Inferior Temporal Lobe	brain
11	chr5:148189200-148194600	Weak transcription	Brain Hippocampus Middle	brain
12	chr5:148189200-148196200	Weak transcription	Adipose Nuclei	Adipose
13	chr5:148189400-148191200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
14	chr5:148189400-148192200	Enhancers	Primary hematopoietic stem cells	blood
15	chr5:148189400-148192200	Enhancers	Primary hematopoietic stem cells short term culture	blood
16	chr5:148189400-148193200	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr5:148189400-148193400	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr5:148189600-148191200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr5:148189600-148191200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr5:148189600-148191200	Enhancers	Thymus	Thymus
21	chr5:148189600-148191400	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr5:148189600-148192800	Enhancers	Primary B cells from peripheral blood	blood
23	chr5:148189600-148194400	Weak transcription	Fetal Stomach	stomach
24	chr5:148190000-148191400	Enhancers	GM12878-XiMat	blood
25	chr5:148190000-148191800	Enhancers	Primary T cells from cord blood	blood
26	chr5:148190200-148191200	Enhancers	Primary T helper cells PMA-I stimulated	--
27	chr5:148190200-148191200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr5:148190200-148191400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr5:148190400-148191200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
30	chr5:148190400-148191400	Weak transcription	Fetal Lung	lung
31	chr5:148190600-148192800	Enhancers	Primary B cells from cord blood	blood
32	chr5:148190800-148195800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr5:148191000-148191800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr5:148191000-148192000	Enhancers	K562	blood

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