Variant report

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11740401	0.84[EUR][1000 genomes]
rs11749057	0.84[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs2546473	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs256946	0.87[CEU][hapmap];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs256960	0.82[AMR][1000 genomes]
rs256961	0.82[AMR][1000 genomes]
rs256966	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs256973	0.84[AMR][1000 genomes]
rs256979	0.84[AMR][1000 genomes]
rs256981	0.84[AMR][1000 genomes]
rs256982	0.82[AMR][1000 genomes]
rs256983	0.84[AMR][1000 genomes]
rs256985	0.84[AMR][1000 genomes]
rs256992	0.82[EUR][1000 genomes]
rs34986301	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4920873	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57028257	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs58301336	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs72817155	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73264735	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7378928	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs7702747	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916273	chr5:114656592-115089901	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv868915	chr5:114723371-115252527	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:114983600-114985200	Enhancers	Adipose Nuclei	Adipose
2	chr5:114983600-114985200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
3	chr5:114983600-114985400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr5:114984600-114986000	Enhancers	Muscle Satellite Cultured Cells	--
5	chr5:114984800-114985200	Enhancers	HSMM	muscle
6	chr5:114984800-114986000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr5:114985000-114985200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr5:114985000-114985800	Enhancers	NH-A	brain
9	chr5:114985000-114985800	Weak transcription	Osteobl	bone

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