Variant report
| Variant | rs73264735 |
|---|---|
| Chromosome Location | chr5:114978793-114978794 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr5:114978146..114980273-chr5:115173627..115175186,2 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000145782 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11740401 | 0.86[EUR][1000 genomes] |
| rs11743277 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs11749057 | 0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs194398 | 0.81[AMR][1000 genomes] |
| rs2546473 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs256946 | 0.87[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs256960 | 0.84[AMR][1000 genomes] |
| rs256961 | 0.84[AMR][1000 genomes] |
| rs256966 | 0.84[AMR][1000 genomes];0.89[EUR][1000 genomes] |
| rs256973 | 0.87[AMR][1000 genomes] |
| rs256979 | 0.87[AMR][1000 genomes] |
| rs256981 | 0.87[AMR][1000 genomes] |
| rs256982 | 0.84[AMR][1000 genomes] |
| rs256983 | 0.87[AMR][1000 genomes] |
| rs256985 | 0.87[AMR][1000 genomes] |
| rs256992 | 0.84[EUR][1000 genomes] |
| rs34986301 | 0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs4920873 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes] |
| rs57028257 | 0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes] |
| rs58301336 | 0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes] |
| rs72817155 | 0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs7378928 | 0.83[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[ASN][1000 genomes] |
| rs7702747 | 0.95[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.81[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv916273 | chr5:114656592-115089901 | Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 28 gene(s) | inside rSNPs | diseases |
| 2 | nsv868915 | chr5:114723371-115252527 | Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 41 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:114976200-114978800 | Weak transcription | Liver | Liver |
| 2 | chr5:114978000-114983600 | Weak transcription | H9 Derived Neuron Cultured Cells | ES cell derived |
