Variant report
| Variant | rs11743556 |
|---|---|
| Chromosome Location | chr5:30302202-30302203 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12186365 | 0.94[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs12186524 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs12188709 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17592394 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs17652083 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs17652137 | 0.89[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs34208847 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs3924075 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4311426 | 1.00[CEU][hapmap];0.88[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs4867030 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs56410637 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs6870433 | 0.89[AMR][1000 genomes];0.82[EUR][1000 genomes] |
| rs72754315 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72754317 | 0.89[AMR][1000 genomes];0.81[EUR][1000 genomes] |
| rs72754323 | 0.89[AMR][1000 genomes] |
| rs72754325 | 0.89[AMR][1000 genomes];0.80[EUR][1000 genomes] |
| rs72754327 | 0.89[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs72754337 | 0.89[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72754350 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs72754373 | 0.98[AMR][1000 genomes];0.97[EUR][1000 genomes] |
| rs72754377 | 0.98[AMR][1000 genomes];0.98[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv881635 | chr5:30122190-30371238 | Enhancers Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 2 | nsv915858 | chr5:30176470-31018294 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv881357 | chr5:30226419-30371238 | Enhancers Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 2 gene(s) | inside rSNPs | diseases |
| 4 | nsv1019680 | chr5:30292001-30431119 | Active TSS Weak transcription Enhancers Flanking Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 5 | nsv1033240 | chr5:30297277-30435195 | Enhancers Flanking Active TSS Weak transcription Active TSS | TF binding regionCpG islandChromatin interactive region | 1 gene(s) | inside rSNPs | diseases |
| 6 | esv3343242 | chr5:30298795-30302593 | Weak transcription Enhancers | n/a | n/a | inside rSNPs | n/a |
| 7 | esv3435105 | chr5:30302036-30302358 | Weak transcription | n/a | n/a | inside rSNPs | n/a |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr5:30301800-30310200 | Weak transcription | H1 BMP4 Derived Mesendoderm Cultured Cells | ES cell derived |
