Variant report

Variant	rs11744445
Chromosome Location	chr5:75767349-75767350
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11745552	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13168171	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13184703	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5009957	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs72775779	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75722800-75767800	Weak transcription	Ovary	ovary
2	chr5:75745000-75767800	Weak transcription	Fetal Thymus	thymus
3	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
4	chr5:75747400-75767800	Weak transcription	Spleen	Spleen
5	chr5:75747800-75767800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr5:75754200-75772000	Weak transcription	Fetal Kidney	kidney
7	chr5:75754400-75768000	Weak transcription	Fetal Lung	lung
8	chr5:75757800-75767800	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr5:75758000-75767800	Weak transcription	Gastric	stomach
10	chr5:75758000-75767800	Weak transcription	Lung	lung
11	chr5:75758000-75769400	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr5:75758200-75767800	Weak transcription	Pancreas	Pancrea
13	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr5:75758400-75769200	Weak transcription	Primary B cells from cord blood	blood
15	chr5:75759200-75771400	Weak transcription	Fetal Intestine Small	intestine
16	chr5:75759400-75767800	Weak transcription	Rectal Mucosa Donor 29	rectum
17	chr5:75762800-75772600	Enhancers	Primary T helper cells PMA-I stimulated	--
18	chr5:75764400-75767800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr5:75764400-75768000	Weak transcription	Primary hematopoietic stem cells	blood
20	chr5:75764400-75768600	Enhancers	Primary T killer memory cells from peripheral blood	blood
21	chr5:75764400-75772800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
22	chr5:75765200-75767800	Enhancers	Liver	Liver
23	chr5:75765400-75772600	Enhancers	Primary T helper naive cells from peripheral blood	blood
24	chr5:75765600-75769000	Weak transcription	Primary neutrophils fromperipheralblood	blood
25	chr5:75765600-75773600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
26	chr5:75765800-75769400	Enhancers	Rectal Mucosa Donor 31	rectum
27	chr5:75765800-75772000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
28	chr5:75765800-75773000	Enhancers	Primary T helper cells fromperipheralblood	blood
29	chr5:75766000-75767800	Weak transcription	Placenta	Placenta
30	chr5:75766000-75768000	Enhancers	HepG2	liver
31	chr5:75766000-75769200	Weak transcription	GM12878-XiMat	blood
32	chr5:75766000-75771200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr5:75766000-75772200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr5:75766200-75767800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
35	chr5:75766200-75771200	Enhancers	Stomach Mucosa	stomach
36	chr5:75766200-75772200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
37	chr5:75766400-75767800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr5:75766600-75767400	Enhancers	Duodenum Smooth Muscle	Duodenum
39	chr5:75766600-75767600	Weak transcription	Primary T cells fromperipheralblood	blood
40	chr5:75766600-75767800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
41	chr5:75766800-75767600	Enhancers	Primary hematopoietic stem cells short term culture	blood
42	chr5:75766800-75770200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr5:75766800-75771000	Enhancers	Primary T cells from cord blood	blood
44	chr5:75767000-75767600	Enhancers	Primary monocytes fromperipheralblood	blood
45	chr5:75767000-75768000	Enhancers	Hela-S3	cervix
46	chr5:75767000-75768600	Enhancers	Duodenum Mucosa	Duodenum
47	chr5:75767200-75767400	Enhancers	K562	blood
48	chr5:75767200-75767600	ZNF genes & repeats	iPS-20b Cell Line	embryonic stem cell
49	chr5:75767200-75768400	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
50	chr5:75767200-75768400	Enhancers	Small Intestine	intestine

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