Variant report

Variant	rs5009957
Chromosome Location	chr5:75770419-75770420
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:75768624..75770806-chr5:75772942..75775472,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11744445	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11745552	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13168171	0.92[CEU][hapmap];1.00[CHB][hapmap];0.93[CHD][hapmap];1.00[JPT][hapmap];0.86[MEX][hapmap];0.91[TSI][hapmap];0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs13184703	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4452539	0.85[MEX][hapmap]
rs72775779	0.80[AMR][1000 genomes];0.82[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3345107	chr5:75768096-75771894	Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:75747200-75771600	Weak transcription	Fetal Stomach	stomach
2	chr5:75754200-75772000	Weak transcription	Fetal Kidney	kidney
3	chr5:75758200-75775000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr5:75759200-75771400	Weak transcription	Fetal Intestine Small	intestine
5	chr5:75762800-75772600	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr5:75764400-75772800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:75765400-75772600	Enhancers	Primary T helper naive cells from peripheral blood	blood
8	chr5:75765600-75773600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:75765800-75772000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr5:75765800-75773000	Enhancers	Primary T helper cells fromperipheralblood	blood
11	chr5:75766000-75771200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr5:75766000-75772200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
13	chr5:75766200-75771200	Enhancers	Stomach Mucosa	stomach
14	chr5:75766200-75772200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
15	chr5:75766800-75771000	Enhancers	Primary T cells from cord blood	blood
16	chr5:75767400-75771000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
17	chr5:75767600-75771200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr5:75767600-75773200	Enhancers	Primary T cells fromperipheralblood	blood
19	chr5:75767800-75771000	Enhancers	Fetal Thymus	thymus
20	chr5:75767800-75773200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr5:75768200-75770600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr5:75768200-75770600	Weak transcription	Gastric	stomach
23	chr5:75768200-75773200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
24	chr5:75768400-75770600	Weak transcription	H1 Cell Line	embryonic stem cell
25	chr5:75768400-75770600	Weak transcription	Colonic Mucosa	Colon
26	chr5:75768400-75770800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr5:75768400-75770800	Enhancers	Liver	Liver
28	chr5:75768400-75774800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
29	chr5:75768400-75774800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr5:75768400-75780000	Weak transcription	Esophagus	oesophagus
31	chr5:75768600-75770800	Weak transcription	Duodenum Mucosa	Duodenum
32	chr5:75768600-75772400	Enhancers	HepG2	liver
33	chr5:75768800-75770800	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr5:75768800-75770800	Weak transcription	Sigmoid Colon	Sigmoid Colon
35	chr5:75769000-75772400	Enhancers	Primary T killer memory cells from peripheral blood	blood
36	chr5:75769400-75772200	Enhancers	H9 Cell Line	embryonic stem cell
37	chr5:75769600-75771200	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr5:75769600-75775600	Enhancers	K562	blood
39	chr5:75769600-75816600	Weak transcription	Primary B cells from cord blood	blood
40	chr5:75769800-75770800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
41	chr5:75769800-75771000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
42	chr5:75769800-75771200	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr5:75769800-75771400	Enhancers	HUES6 Cell Line	embryonic stem cell
44	chr5:75770000-75771200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr5:75770000-75775000	Weak transcription	Primary monocytes fromperipheralblood	blood
46	chr5:75770000-75775200	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr5:75770000-75777600	Weak transcription	Primary neutrophils fromperipheralblood	blood
48	chr5:75770000-75779600	Weak transcription	GM12878-XiMat	blood
49	chr5:75770200-75771600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr5:75770200-75772200	Enhancers	Placenta	Placenta

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