Variant report

Variant	rs11746643
Chromosome Location	chr5:35833717-35833718
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10075764	0.80[ASN][1000 genomes]
rs11567694	0.80[JPT][hapmap]
rs11742240	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs12697352	0.80[ASN][1000 genomes]
rs13436926	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs4869426	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs6881270	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs6881706	0.80[CHB][hapmap];0.80[JPT][hapmap]
rs6890853	0.80[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:35830600-35837600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:35831000-35835200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
5	chr5:35831000-35839200	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr5:35832000-35834800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr5:35832000-35836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
8	chr5:35832000-35839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35832600-35833800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr5:35833200-35834600	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
11	chr5:35833200-35836000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
12	chr5:35833200-35839000	Enhancers	Primary T cells fromperipheralblood	blood
13	chr5:35833400-35833800	Flanking Active TSS	Primary T cells from cord blood	blood
14	chr5:35833400-35834000	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr5:35833400-35834200	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr5:35833400-35835000	Enhancers	Fetal Thymus	thymus
17	chr5:35833400-35836600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr5:35833600-35834000	Enhancers	Thymus	Thymus

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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