Variant report

Variant	rs11567694
Chromosome Location	chr5:35857704-35857705
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10063294	0.88[CHB][hapmap];0.94[JPT][hapmap]
rs10213865	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10214237	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10214273	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10472984	0.86[AMR][1000 genomes]
rs11567705	0.82[CHB][hapmap];0.88[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11742240	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11742270	1.00[CEU][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12658443	0.81[ASN][1000 genomes]
rs13188960	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1494564	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs34463936	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs4594881	0.86[AMR][1000 genomes]
rs62351974	0.81[EUR][1000 genomes]
rs62351975	0.81[EUR][1000 genomes]
rs6871748	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6881270	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6881706	1.00[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6890853	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6897932	1.00[CEU][hapmap];0.80[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7717955	1.00[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs987106	0.88[CHB][hapmap];0.94[JPT][hapmap];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv881055	chr5:35850693-35858721	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv881685	chr5:35850693-35859863	Enhancers Weak transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv881358	chr5:35850693-35861068	Enhancers Transcr. at gene 5' and 3' Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
5	nsv880610	chr5:35850693-35866265	ZNF genes & repeats Weak transcription Flanking Active TSS Strong transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv880517	chr5:35850693-35870814	Flanking Active TSS Enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv597813	chr5:35855264-35864590	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv597814	chr5:35855410-35859002	Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Enhancers	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
9	nsv881045	chr5:35856575-35861068	Flanking Active TSS Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35852400-35859200	Weak transcription	Lung	lung
2	chr5:35852400-35862800	Enhancers	Hela-S3	cervix
3	chr5:35853800-35858000	Enhancers	GM12878-XiMat	blood
4	chr5:35854200-35857800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr5:35854800-35857800	Weak transcription	Primary hematopoietic stem cells	blood
6	chr5:35855400-35862400	Enhancers	HSMMtube	muscle
7	chr5:35856200-35859800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
8	chr5:35856400-35858200	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr5:35856400-35858400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
10	chr5:35856400-35858400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
11	chr5:35856400-35858800	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
12	chr5:35856400-35859000	Active TSS	Primary T helper naive cells from peripheral blood	blood
13	chr5:35856600-35858000	Active TSS	Sigmoid Colon	Sigmoid Colon
14	chr5:35856600-35859000	Active TSS	Primary T cells from cord blood	blood
15	chr5:35856600-35859000	Active TSS	Primary T killer naive cells fromperipheralblood	blood
16	chr5:35856600-35860400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr5:35856800-35858000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr5:35856800-35858000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
19	chr5:35856800-35858000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
20	chr5:35856800-35858000	Flanking Active TSS	HMEC	breast
21	chr5:35856800-35858000	Flanking Active TSS	NHDF-Ad	bronchial
22	chr5:35856800-35858000	Flanking Active TSS	Osteobl	bone
23	chr5:35856800-35858400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr5:35856800-35858800	Active TSS	Primary T cells fromperipheralblood	blood
25	chr5:35856800-35859200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
26	chr5:35856800-35859400	Active TSS	Primary Natural Killer cells fromperipheralblood	blood
27	chr5:35857000-35857800	Flanking Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
28	chr5:35857000-35857800	Active TSS	Dnd41	blood
29	chr5:35857000-35858000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr5:35857000-35858000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
31	chr5:35857000-35858000	Flanking Active TSS	NHEK	skin
32	chr5:35857000-35858200	Transcr. at gene 5' and 3'	Primary T helper memory cells from peripheral blood 1	blood
33	chr5:35857000-35858200	Active TSS	Primary T helper 17 cells PMA-I stimulated	--
34	chr5:35857000-35858800	Active TSS	Primary T killer memory cells from peripheral blood	blood
35	chr5:35857000-35859000	Active TSS	Primary T helper cells fromperipheralblood	blood
36	chr5:35857000-35859000	Active TSS	NHLF	lung
37	chr5:35857000-35859400	Active TSS	Fetal Thymus	thymus
38	chr5:35857000-35859600	Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr5:35857000-35860600	Active TSS	Duodenum Mucosa	Duodenum
40	chr5:35857000-35860800	Enhancers	HUES64 Cell Line	embryonic stem cell
41	chr5:35857000-35861000	Active TSS	Thymus	Thymus
42	chr5:35857000-35861200	Active TSS	Rectal Mucosa Donor 29	rectum
43	chr5:35857000-35861400	Enhancers	ES-I3 Cell Line	embryonic stem cell
44	chr5:35857000-35861800	Enhancers	HUES48 Cell Line	embryonic stem cell
45	chr5:35857200-35857800	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
46	chr5:35857200-35858000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr5:35857200-35858000	Active TSS	Small Intestine	intestine
48	chr5:35857200-35858000	Flanking Active TSS	NH-A	brain
49	chr5:35857200-35860000	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
50	chr5:35857400-35857800	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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