Variant report

Variant	rs6871748
Chromosome Location	chr5:35885982-35885983
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10060353	1.00[YRI][hapmap]
rs10213865	0.88[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10214237	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10214273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs10472984	0.83[AMR][1000 genomes]
rs11567694	0.89[CEU][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11567705	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11742240	0.88[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11742270	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12658443	0.85[EUR][1000 genomes]
rs12658494	0.85[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13188960	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs1494564	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34463936	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4594881	0.83[AMR][1000 genomes]
rs62351974	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62351975	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6881270	0.88[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6881706	0.88[CEU][hapmap];0.92[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6885455	1.00[YRI][hapmap]
rs6890853	0.90[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6893645	1.00[YRI][hapmap]
rs6897932	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7709291	0.81[CHB][hapmap]
rs7717955	0.88[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35882800-35887800	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr5:35883200-35887800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr5:35883400-35887600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr5:35883600-35888400	Enhancers	Dnd41	blood
5	chr5:35884800-35886000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr5:35884800-35889200	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr5:35885000-35886000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr5:35885000-35887400	Weak transcription	Thymus	Thymus
9	chr5:35885200-35887400	Weak transcription	Fetal Thymus	thymus
10	chr5:35885200-35890600	Weak transcription	NHEK	skin
11	chr5:35885400-35887600	Weak transcription	Primary hematopoietic stem cells	blood
12	chr5:35885400-35889800	Weak transcription	NHLF	lung
13	chr5:35885400-35890400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr5:35885600-35887400	Weak transcription	HMEC	breast
15	chr5:35885600-35890600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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