Variant report

Variant	rs10214237
Chromosome Location	chr5:35883734-35883735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs10060353	1.00[YRI][hapmap]
rs10213865	0.88[CEU][hapmap];0.81[CHB][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10214273	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10472984	0.83[AMR][1000 genomes]
rs11567694	0.89[CEU][hapmap];0.81[CHB][hapmap];0.81[JPT][hapmap];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11567705	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11742240	0.88[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs11742270	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12658443	0.85[EUR][1000 genomes]
rs12658494	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13188960	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1494564	0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs34463936	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4594881	0.83[AMR][1000 genomes]
rs62351974	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62351975	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6871748	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6881270	0.88[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6881706	0.88[CEU][hapmap];0.93[CHB][hapmap];0.81[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6885455	1.00[YRI][hapmap]
rs6890853	0.90[CEU][hapmap];0.82[CHB][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs6893645	1.00[YRI][hapmap]
rs6897932	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7709291	0.82[CHB][hapmap]
rs7717955	0.88[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7730536	0.83[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35860400-35883800	Weak transcription	Small Intestine	intestine
2	chr5:35876600-35884600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr5:35879800-35883800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
4	chr5:35879800-35885000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
5	chr5:35880200-35885000	Enhancers	Thymus	Thymus
6	chr5:35880400-35884400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr5:35881400-35885600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
8	chr5:35881800-35884800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr5:35881800-35885200	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr5:35882000-35884800	Enhancers	Primary T helper naive cells from peripheral blood	blood
11	chr5:35882000-35885200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr5:35882600-35884600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr5:35882600-35884800	Enhancers	Primary T cells fromperipheralblood	blood
14	chr5:35882600-35884800	Enhancers	Primary T killer memory cells from peripheral blood	blood
15	chr5:35882800-35884000	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:35882800-35885600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr5:35882800-35887800	Enhancers	Primary hematopoietic stem cells short term culture	blood
18	chr5:35883200-35884000	Enhancers	NHLF	lung
19	chr5:35883200-35884200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr5:35883200-35884800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
21	chr5:35883200-35885000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr5:35883200-35885200	Enhancers	Primary T helper cells fromperipheralblood	blood
23	chr5:35883200-35885200	Enhancers	Fetal Thymus	thymus
24	chr5:35883200-35885200	Enhancers	NHEK	skin
25	chr5:35883200-35885400	Enhancers	NHDF-Ad	bronchial
26	chr5:35883200-35887800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr5:35883400-35883800	Weak transcription	Primary monocytes fromperipheralblood	blood
28	chr5:35883400-35883800	Enhancers	Hela-S3	cervix
29	chr5:35883400-35884200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr5:35883400-35884800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr5:35883400-35885200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr5:35883400-35885200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr5:35883400-35885400	Enhancers	Primary hematopoietic stem cells	blood
34	chr5:35883400-35885600	Enhancers	HMEC	breast
35	chr5:35883400-35887600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr5:35883600-35885200	Enhancers	Primary T cells from cord blood	blood
37	chr5:35883600-35885200	Enhancers	Osteobl	bone
38	chr5:35883600-35885400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr5:35883600-35885600	Enhancers	Muscle Satellite Cultured Cells	--
40	chr5:35883600-35885600	Enhancers	HSMM	muscle
41	chr5:35883600-35888400	Enhancers	Dnd41	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links