Variant report

Variant	rs10472984
Chromosome Location	chr5:35843832-35843833
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10075764	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10213865	0.86[AMR][1000 genomes]
rs10214237	0.83[AMR][1000 genomes]
rs10214273	0.83[AMR][1000 genomes]
rs11567694	0.86[AMR][1000 genomes]
rs11567705	0.86[AMR][1000 genomes]
rs11742240	0.85[AMR][1000 genomes]
rs11742270	0.85[AMR][1000 genomes]
rs12697352	0.87[AFR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs13188960	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1494564	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34463936	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4594881	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6871748	0.83[AMR][1000 genomes]
rs6881270	0.85[AMR][1000 genomes]
rs6881706	0.85[AMR][1000 genomes]
rs6890853	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6897932	0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7717955	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35841600-35845200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
2	chr5:35842800-35845800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
3	chr5:35843000-35847000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:35843400-35845800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
5	chr5:35843600-35844600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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