Variant report

Variant	rs34463936
Chromosome Location	chr5:35850149-35850150
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10213865	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10214237	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10214273	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10472984	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11567694	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11567705	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11742240	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs11742270	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13188960	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1494564	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4594881	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62351974	0.80[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62351975	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6871748	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6881270	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6881706	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6890853	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs6897932	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7717955	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35848400-35852200	Enhancers	Primary T helper naive cells from peripheral blood	blood
2	chr5:35848600-35852000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
3	chr5:35848800-35851200	Weak transcription	Fetal Muscle Leg	muscle
4	chr5:35848800-35852400	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35849200-35852000	Enhancers	Primary T cells from cord blood	blood
6	chr5:35849600-35852200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:35849600-35856200	Enhancers	Dnd41	blood
8	chr5:35849800-35852200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
9	chr5:35849800-35852600	Enhancers	Primary T cells fromperipheralblood	blood
10	chr5:35849800-35852800	Enhancers	Thymus	Thymus
11	chr5:35849800-35853200	Enhancers	Fetal Thymus	thymus
12	chr5:35850000-35851000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35850000-35852200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
14	chr5:35850000-35852600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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