Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10213865	0.81[EUR][1000 genomes]
rs10214237	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10214273	0.87[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11567694	0.81[EUR][1000 genomes]
rs11567705	0.81[EUR][1000 genomes]
rs11742240	0.82[EUR][1000 genomes]
rs11742270	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12658443	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12658494	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs13188960	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs1494564	0.80[EUR][1000 genomes]
rs34463936	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62351974	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62351976	0.81[EUR][1000 genomes]
rs6871748	0.87[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6881270	0.81[EUR][1000 genomes]
rs6881706	0.81[EUR][1000 genomes]
rs6890853	0.80[EUR][1000 genomes]
rs6897932	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7717955	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv471011	chr5:35861068-36003217	Weak transcription Bivalent Enhancer Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv830261	chr5:35863084-36018048	Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35891200-35896400	Weak transcription	Thymus	Thymus
2	chr5:35891400-35902400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr5:35891600-35893800	Weak transcription	Fetal Thymus	thymus
4	chr5:35892200-35893600	Weak transcription	Dnd41	blood

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