Variant report

Variant	rs7709291
Chromosome Location	chr5:35848563-35848564
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1494565	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs1845482	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2885272	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4370302	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6891427	0.92[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6897932	0.81[CHB][hapmap];0.85[JPT][hapmap]
rs7717955	0.85[JPT][hapmap]
rs9292615	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35847000-35848600	Enhancers	Fetal Lung	lung
2	chr5:35847600-35848800	Enhancers	Fetal Muscle Leg	muscle
3	chr5:35848000-35849800	Weak transcription	Thymus	Thymus
4	chr5:35848000-35850000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
5	chr5:35848200-35849600	Weak transcription	Dnd41	blood
6	chr5:35848400-35848800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:35848400-35850000	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr5:35848400-35852200	Enhancers	Primary T helper naive cells from peripheral blood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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