Variant report

Variant	rs2885272
Chromosome Location	chr5:35845586-35845587
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10063294	0.85[AMR][1000 genomes]
rs1494565	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1845482	1.00[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4370302	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4466190	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4482926	0.87[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56082154	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6891427	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7709291	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9292615	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs987106	0.81[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35842800-35845800	ZNF genes & repeats	HUES64 Cell Line	embryonic stem cell
2	chr5:35843000-35847000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr5:35843400-35845800	ZNF genes & repeats	Primary T helper cells PMA-I stimulated	--
4	chr5:35844600-35846600	ZNF genes & repeats	Dnd41	blood
5	chr5:35845200-35845800	ZNF genes & repeats	Primary T killer memory cells from peripheral blood	blood
6	chr5:35845400-35846200	ZNF genes & repeats	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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