Variant report

Variant	rs56082154
Chromosome Location	chr5:35835571-35835572
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1494565	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1845482	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2885272	0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4370302	0.92[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4466190	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4482926	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62355266	0.84[AFR][1000 genomes];0.90[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs6891427	0.90[AFR][1000 genomes];0.85[AMR][1000 genomes];0.87[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs9292615	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1022761	chr5:35775802-35902546	Enhancers Weak transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:35819600-35835600	Enhancers	Primary T killer memory cells from peripheral blood	blood
2	chr5:35824400-35835800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr5:35830600-35837600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
4	chr5:35831000-35839200	Enhancers	Primary T helper cells fromperipheralblood	blood
5	chr5:35832000-35836400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:35832000-35839000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
7	chr5:35833200-35836000	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
8	chr5:35833200-35839000	Enhancers	Primary T cells fromperipheralblood	blood
9	chr5:35833400-35836600	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:35833800-35836000	Enhancers	Primary T cells from cord blood	blood
11	chr5:35834200-35835800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
12	chr5:35835200-35836000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
13	chr5:35835200-35837200	Enhancers	GM12878-XiMat	blood
14	chr5:35835400-35835600	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr5:35835400-35836200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
16	chr5:35835400-35836600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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